XLOC_001895 (ggcx)


Basic Information

Item Value
gene id XLOC_001895
gene name ggcx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7703251 ~ 7723457 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003746
AGTAGGGTGCTGCTCCTCCGTTGGACACGTACTTCAGTCTGTTGTGGTAATGTCTACCTGTGTGACCGATGTGATaatatttcagtaattttgtaACGTTTTCTAACGTTAGTGCAGACTGGTTTCGTATCCTGCAAGATGGAGCCAAAGGCTAGTGACACGACCGCAGGTGCTTCATATGTCGAATCATCTAAATCCAAGAGAAGGAACAGTAAGGAGATCAAACAGGCGACTGTGGCCCTCTCCCAGCAGATCAGCACCATGAAGCGTCTCTTTGGCTTTGAGAAGGAAGACGTCTCATCGTGGGATCGGTTTGTGTGTCTTCTCAATCGTCCCACTGATCCGGCCTCACTTGGGATTTTCCGTTTCTTATTTGGTATGCTGATGGCTCTGGACATCACCCAGGAGAGAGGACTGAGTCATCTGGACTACAAGTATTTAGATGGGGCACCAGTGTGCCGCTTCCCCCTCTTTAACTTCCTGAAGCCGCTTCCCATGGACTGGATGTTCTTTGTGTATTTTGTGATGTTCCTTGGTGCTGTTGGTATCATGCTTGGCTGCTTTTATCGCATTGCCTGTCTGATGTTTATTTCCGCTTACTGGTATATTTTCTTCCTGGACAAAACAACCTGGAACAATCACTCTTATCTGTATGGACTCATCGGCTTCCAGCTCACGCTCATGGATGCCAACAGATACTGGTCAGTAGATGGACTCAGAAACCCGAGGAAGAGGAACGCTCATGTGCCTCTGTGGAACTACACTTTGCTGAGAACTCAgATTTTCATAGTGTACTTCATTGCTGGGGTTAAGAAACTGGATGCTGATTGGGTGGAAGGATACTCCATGAAATACTTGGCACATCATTGGTTATTTGACCCTTTCAAAGTGATCTTGCCTGTGGAAGTGGTCAGTCTGACGGTGGTCCATGGTGGAGGTCTGATCTTAGACCTCACAGCTGGCTATCTGCTTTTCTTTGATGTCACTCGTCCAGTCGCCATCTTCTTTGTCTCCTATTTCCACTGCATGAATTCCCAGCTTTTTAGCATAGGGATGTTTTCTTACACCATGTTGTCCACAAGCCCTCTCTTCTGCTACCCTGATTGGCCCAGACGTTTTTTCGGCCATTTTCCAGAGTTCCTTCAACCTATACTGCCTCAGGATGAGCATCTGAAAGACGAGGGGGGGCACggagagctgtgataaaacacatTGTTACTGAGCTGCTGGTGGTCCTGCAGCAAACCAACAAATGCTTAAGTAGGTCAGTATTTTTGGAGCATTCCATGATTTTGAGAAAAAATCAGTTTGTTGTTTACAAATAATTCCCTTTTCTTaagct
>TCONS_00003747
tagGGATGTTTTCTTACACCATGTTGTCCACAAGCCCTCTCTTCTGCTACCCTGATTGGCCCAGACGTTTTTTCGGCCATTTTCCAGAGTTCCTTCAACCTATACTGCCCTTCATCTCCCTGGCCCCGATTCCCAGCTCCTCCTGCGTTTACCCAAATCCATCCAGCAGCTCTGGAGGACAAGAGGAGGCCCATGCTGAGCCCAAACCCACCACACCATACTTTAAACACAAACTTAGAGCCTTCTTTGTTATCTTGTACATCCTGGAGCAGTTCTTCTTGCCGTACTCGCACTTCATCACACAGGGTTATAACAACTGGACAAATGGATTGTATGGCTACTCGTGGGACATGATGGTTCACTCCCGCTCTCATCAGCATGTCAAGATCACCTACAGAGATGGAGTAACAGGGGAGGTCGGATATTTGAACCCAGGAGTTTTCACTCAGAGCCGGAGATGGAAAGATCACGGAGACATGTTGAAGCAGTACGCTACCTGCCTCAGTGAAAATCTGCCACGCTTCAACATCTCAGATCCAGAGATCTACTTTGACATTTGGGTGTCCATCAATGACCGCTTCCAGCAGAGGATATTTGACCCACATGTTGACATTGTTAAGGCTGATTGGTCACCATTCAGACCTAATCCATGGCTTATGCCACTGCTAGTTGATCTTTCGCCATGGAGAACTAAATTTGAGGAGATTGAAGGGTCTTTAGACAACCAGACTGAGGTGGTGTTCATCGCTGACTTTCCAGGTCTGTTTCTGGAAAACTTTGTGAGTGAAGATCTTGGGAACACGAGCGTTCAGGTCCTGGCCGGTGAAGTGAATGTTGAAATAGTGGATGAGAAAAAGAACTACAGTTTACAACCTGGAGAAAAGATGCAGatTCCAGCTGGTGAATACCATAAAGTGTACACGGTGTCTCAAGGACCATCGTGTTACATGTACATCTATGTGAACACCACTGAGGCGGAGCTTCAAAAGAACTTCACCAAGCTTTCTGAACTTCAGGAGAAAGTGCGCAATGGAACAGAAACAGAGCCTTTGCCTCCTGAGCTGCAGCCACTCATCACTGGACTCGACGACCAGGACTCAGAAAACACTGTGATCGACCCAGTAGTGCGGATCTTCTTGAAAAGACAAAAACGTATGCAGGAGGTCAGGAAGAGACGAGAAGCTTCTATGCTTGAACGCTTCCAGAGATTTGCCTCAAAGAAATACTACTCCATTAGACGAGGGTTTTTGATGACAGCCATTGCTTTGCGGAATTTGGCAGTTGGTTTGCCACCGATTGAGCAACTGACCAAAGAAGTGGCCTACGCCAACCTGAAGGAGCCAGAGACTGAGATGAGTCAGGATGAGCATCTGAAAGACGAGGGGGGGCACggagagctgtgataaaacacatTGTTACTGAGCTGCTGGTGGTCCTGCAGCAAACCAACAAATGCTTAAGTAGGTCAGTATTTTTGGAGCATTCCATGATTTTGAGAAAAAATCAGTTTGTTGTTTACAAATAATTCCCTTTTCTTaagctaacaaacaaaaaaaaagaccaaaaatatAAATCTAACATCATTTACACCCATGTTGTtcaaagatttttaaagaaatcttaaATTTTGTCCTGTTCTTATCATGTTCCTGTCAAGTGGCTCCAAAAGGCATGGAATATACtatagtgcagtgtttctcaaccacattcctggaggaccaccagcactgcatgtttttggatgtcTTCCTttggtggttgagaaacactgctatagtGCACaacatggggaaaaaaaaatcctgaagtgttttttttttttcaagcttgaCTGTGTCTGTCTTTATTTTACTTCCAAAAGAGCAGCAggaacatatttttaaaactctCCTTAGGCATCTGATTGATGTCATACAACATGACGGCCAGTAGATTATGAgagaatttatattttaaatgtagtaATTTTGGATGAAACTTAGTAACTATGGAATTTTGTTTCTGCCatgaaataacaatataaaaaggtAATTATGATTTAATCTTAGTcaaagtttaaagggatagttcacccaaatagaaaactcactatttgctcaccctcaagtggttataaaccttaatgactttcttctgttgaacacaaaaaaacgaGACATtgtgaagaaagttgaaaacctgtaacattGACATtcataataggaaaaaaaaaatgtcaaggaagtcaatggttacaggttttcagcttttttccaaAGTAACtttgtgttcaatggaaaaaaaatctcaaaccggtttgaaacaagtaaagggagtGTAAATAAAGAGAGAATTTAGATTTTTGACTCTAACAATCcctttaactttttgtttttaatacggTTTAAATCGAATATTTTCAacttttcttcttctttgaaTTTAAATCAAAGAACTTAGTTTTTCCCCCTAAATTGAGTTCTTATAAGTGAGATATAATCTCTGGATTGTAAAAGTGTGAATTAAAAGCTAAATTCTGTCAATTACcttttcatattttcattttgtgtCTGTAGTAGTTTACCTTTTTCGCTTCGGTTActgaaataatgtaatatttgagAGCAGAAAAACACTAATCTTTAAACACTAATCATTTGCTCTTTTCAAGCATTAgataaaaaaatactttcatttgAACCATACTTTTTttcttcaaacaaaaaaaaaaaagagcttttatTTTACAATTCACCCAATTGTGCTTAAGGGATCCTGCCTCTGTATTGTCCCGTCACAGGATTTATGCATTGAGTAAATCAAATGCACTTTTTCCCCACAAACAACTTTTAATTGGACAAAATATTGGCTTTAAAATGTGCCAAACATGGGCAGGTACCAAATTGTCTTTAATGCATAAGTTTCATTATGCTACATGCTGTTATTAAATGCAACATCAACTCAACCTTCTCACGGCTTTTATACAGTACAGTATGCACACTGTGATTGTGAGATTGGAAATGCaggaaagttgttgttgttgttttttctttgtctcagtgtcaatttttttaaatgaataaagtgCAGAAGCAGAGTATTTaccaaatgaataaa
>TCONS_00003748
atgttctgcctttgtgctttgttttctttgtttgctcGACCATCGTGTTACATGTACATCTATGTGAACACCACTGAGGCGGAGCTTCAAAAGAACTTCACCAAGCTTTCTGAACTTCAGGAGAAAGTGCGCAATGGAACAGAAACAGAGCCTTTGCCTCCTGAGCTGCAGCCACTCATCACTGGACTCGACGACCAGGACTCAGAAAACACTGTGATCGACCCAGTAGTGCGGATCTTCTTGAAAAGACAAAAACGTATGCAGGAGGTCAGGAAGAGACGAGAAGCTTCTATGCTTGAACGCTTCCAGAGATTTGCCTCAAAGAAATACTACTCCATTAGACGAGGGTTTTTGATGACAGCCATTGCTTTGCGGAATTTGGCAGTTGGTTTGCCACCGATTGAGCAACTGACCAAAGAAGTGGCCTACGCCAACCTGAAGGAGCCAGAGACTGAGATGAGTCAGGATGAGCATCTGAAAGACGAGGGGGGGCACggagagctgtga
>TCONS_00003749
ATGTGCGGACCATCGTGTTACATGTACATCTATGTGAACACCACTGAGGCGGAGCTTCAAAAGAACTTCACCAAGCTTTCTGAACTTCAGGAGAAAGTGCGCAATGGAACAGAAACAGAGCCTTTGCCTCCTGAGCTGCAGCCACTCATCACTGGACTCGACGACCAGGACTCAGAAAACACTGTGATCGACCCAGTAGTGCGGATCTTCTTGAAAAGACAAAAACGTATGCAGGAGGTCAGGAAGAGACGAGAAGCTTCTATGCTTGAACGCTTCCAGAGATTTGCCTCAAAGAAATACTACTCCATTAGACGAGGGTTTTTGATGACAGCCATTGCTTTGCGGAATTTGGCAGTTGGTTTGCCACCGATTGAGCAACTGACCAAAGAAGTGGCCTACGCCAACCTGAAGGAGCCAGAGACTGAGATGAGTCAGGATGAGCATCTGAAAGACGAGGGGGGGCACggagagctgtga

Function

symbol description
ggcx Predicted to enable gamma-glutamyl carboxylase activity and vitamin binding activity. Predicted to be involved in peptidyl-glutamic acid carboxylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; digestive system; fin; otic placode; and polster. Human ortholog(s) of this gene implicated in combined deficiency of vitamin K-dependent clotting factors 1. Orthologous to human GGCX (gamma-glutamyl carboxylase).

GO:

id name namespace
GO:0017187 peptidyl-glutamic acid carboxylation biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019842 vitamin binding molecular_function
GO:0008488 gamma-glutamyl carboxylase activity molecular_function

KEGG:

id description
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis

ZFIN:

id description
ZDB-GENE-030826-27 Predicted to enable gamma-glutamyl carboxylase activity and vitamin binding activity. Predicted to be involved in peptidyl-glutamic acid carboxylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; digestive system; fin; otic placode; and polster. Human ortholog(s) of this gene implicated in combined deficiency of vitamin K-dependent clotting factors 1. Orthologous to human GGCX (gamma-glutamyl carboxylase).

Ensembl:

ensembl_id ENSDARG00000067805

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003746 False 1342 mRNA 0.46 9 7703251 7721903
TCONS_00003747 False 3096 mRNA 0.39 8 7709724 7723457
TCONS_00003748 False 507 mRNA 0.48 4 7718156 7721764
TCONS_00003749 True 477 mRNA 0.49 4 7719796 7721764

Neighbor

gene id symbol gene type direction distance location
XLOC_001894 fam136a coding upstream 30302 7671260 ~ 7672949 (+)
XLOC_001893 hint1 coding upstream 62454 7636811 ~ 7640797 (+)
XLOC_001892 ppp2cb coding upstream 85503 7593185 ~ 7617748 (+)
XLOC_001891 tex15 coding upstream 114373 7585928 ~ 7588878 (+)
XLOC_001890 BX537303.1 coding upstream 125200 7573316 ~ 7578051 (+)
XLOC_001896 sftpba coding downstream 74630 7798087 ~ 7805010 (+)
XLOC_001897 NA coding downstream 85254 7808711 ~ 7809243 (+)
XLOC_001898 NA coding downstream 119949 7843406 ~ 7849873 (+)
XLOC_001899 NA coding downstream 147152 7870609 ~ 7901888 (+)
XLOC_001900 NA coding downstream 255060 7978517 ~ 7984582 (+)
XLOC_001884 NA non-coding upstream 947485 6754270 ~ 6755766 (+)
XLOC_001871 NA non-coding upstream 1586315 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1822018 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 1909725 5788407 ~ 5793526 (+)
XLOC_001901 NA non-coding downstream 264568 7988025 ~ 7992459 (+)

Expression


Co-expression Network