XLOC_001896 (sftpba)


Basic Information

Item Value
gene id XLOC_001896
gene name sftpba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7798087 ~ 7805010 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003750
GAATCCCTCTGAAATCTGTACTTATCTTGGACTGTGTGGTGGCCGTGATAGTGGCAAGATTAAAGACCTTCTGCTTAATCACATGTCGAAGACTGGAACAATGCCACCTATGCAGATGGAGTCGTCTGTCCAGTGCTCTGTTTGCACATACATCGTCAGCACACTTGGCTTTCTGTTCCCCAAAGAGAGGACTCAGAACATCATAACTGTCCTGCTTGAGAGTTTGTGCAAGGAGTTTCCTCCTCTGGTTCAGCCACAGTGCAATAAGTTGGTTGGAAAATACGTCCAGATGTTGGTTGACATGCTGCTGAACAACACCTCTCCCAACTTCATTTGCACTCTGCTTCGTCTATGTGAAATATCTGAGCGTCAGATCAACACTCTTGCACTTTCTAACTGTGATTCCTGCCTTACATTGGCGGTTCTTACTCAAATGCATCTGGGCTCCAATGCCACTGAGCACCAAGCTGCTTCTTTCCTGGACAGTGTCTGCCAGTTGAACCCCAACGCCATGCCAAAGtgcGAGACTTACATTGAGCGTAATGGAAAACAACTCAGTCTGTTTCTGAGCAAACAGCAGGGGGCGCTTGACACTTGCAAGAGTGCAAATTTGTGCCCTTCTGATGATAAGGAGTCTGTGATTACGGCTGACCCCTGTAGTCTCGGACCAAAATACAGCTGCAGAGACCTCCAGACTGCTGTCGAGTGTGGGGCATTTTCCTTTTGCCAGAAGTCTGTGTGGGCATGAATCTGTTTCGGCTGTGCTTACTAAAGAAACAGAGTGAACGGTGAAGGCGTATttccagcatgtgtgtgtgtgcgtgttctaACAGCATCTTTGCATTATTAATGTAGTATTTCTGAAAGGCTGATGGACTCATTAAACCAACTCCACTATTTTTCCCCCTGCTTTTGCAGATTGAAAATAAGGGTCACAAGACATAGGCTTCGATAAGATCTTTAgcaaacaaaatacataaaaccactTAGCACAAAGACATGTTCACATTCTGGGGCAGTTGCTATTTTAACAAAACACGATACTGTTTCTTGAGCAACATCATTGATCTTGCGATACTTTTATCAGCATTGTGCAAGCTTTTAAGAAAGGTCTATTCATAGATCATTTACAATATTATCTTGAATTTGAATAATTGTTTTGGAGAGCGTAAATATTTGATCAGTGataatgttaattttttataaCTAAGAGCAAAATGATGTATATTGTAAGAGTATATTTACAATGGCGGTGCAGGAATGACGtcgaaaaataaatatttttaacatggGAATAAATGTCTATGCTAAACATAACCCGATGATACTTAGTTTTGCTCAGCGTAACGAAAGCATCTGATCATAGGAATGTTTGCACAGATGCTGCAATTTACTGTTAAgtcaatatataataaaacatggGTCTCACactgaattcctggagggctgca

Function

symbol description
sftpba Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in lung disease (multiple); respiratory syncytial virus infectious disease; and toxic shock syndrome. Orthologous to human SFTPB (surfactant protein B).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-378 Predicted to be located in extracellular region. Predicted to be active in extracellular space. Human ortholog(s) of this gene implicated in lung disease (multiple); respiratory syncytial virus infectious disease; and toxic shock syndrome. Orthologous to human SFTPB (surfactant protein B).

Ensembl:

ensembl_id ENSDARG00000094708

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003750 True 1451 mRNA 0.42 8 7798087 7805010

Neighbor

gene id symbol gene type direction distance location
XLOC_001895 ggcx coding upstream 74630 7703251 ~ 7723457 (+)
XLOC_001894 fam136a coding upstream 125138 7671260 ~ 7672949 (+)
XLOC_001893 hint1 coding upstream 157290 7636811 ~ 7640797 (+)
XLOC_001892 ppp2cb coding upstream 180339 7593185 ~ 7617748 (+)
XLOC_001891 tex15 coding upstream 209209 7585928 ~ 7588878 (+)
XLOC_001897 NA coding downstream 3701 7808711 ~ 7809243 (+)
XLOC_001898 NA coding downstream 38396 7843406 ~ 7849873 (+)
XLOC_001899 NA coding downstream 65599 7870609 ~ 7901888 (+)
XLOC_001900 NA coding downstream 173507 7978517 ~ 7984582 (+)
XLOC_001901 NA coding downstream 183015 7988025 ~ 7992459 (+)
XLOC_001890 BX537303.1 non-coding upstream 220036 7573316 ~ 7578051 (+)
XLOC_001884 NA non-coding upstream 1042321 6754270 ~ 6755766 (+)
XLOC_001871 NA non-coding upstream 1681151 6116294 ~ 6116936 (+)
XLOC_001868 NA non-coding upstream 1916854 5880700 ~ 5881233 (+)
XLOC_001867 NA non-coding upstream 2004561 5788407 ~ 5793526 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_06659869_06667425 NA coding CI01000304 null 6659824 ~ 6667499 (-)