XLOC_001903 (sub1a)


Basic Information

Item Value
gene id XLOC_001903
gene name sub1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8091144 ~ 8098099 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003751
GGTACATTCTGCAAGCGCGCGCTCAGTACAGGTTTTGCAGAAAGGGACGATCGCGCGCATCAGCTTGTGTTTCACCTCAGTTCACCCTACATTTACCTTACAACATCACGATAAATTGCATTGTCGTTGTTTTCAGTATGCCGAAGTCAAAAGAAGTGCTGTCTTCAACCTCAGGCAGCGATTCGGACAGTGAAGTTGACACGAAGGCCAAGAGAAAGAAGCAGGCGACACCTGAAAAACCatcaaaaaagcaaaaaagcGGAGAAAGTTCATCTGCCTCcaaaagcagcagcagcaataAAAATGATAACATGTTCCAGatagGAAAGATGAGGTATGTGAGTGTTCGGGATTTTAAAGGAAAAGTGCTTATTGATATCCGGGAATACTGGATGGACCAAGAGGGTGAAATGAAACCAGGCAGGAAAGgTATTTCACTCAACCCAGAGCAGTGGAACCAACTAAAAGAGCAGATAAGTGAGATCGATGATGCCGTGAAGAGGACATAAGTCCTTCCTGCAGTTCACTGACAACCCGGATACTCTTTTTGAAACAGATTTTCACTTCACACTCCTGCCTATCCTGCCATTTTAAGGTTTTATTAAAGtagttgttcattgtttgatGCCTTTTCTATTTGAGCCTTTCAACGTGTTGGTTTTAAAAGGGGTTGGATAGAGAGATGACTGGTTTTAGCTTGTGCCCTGAATTTTCAATAAAGTTGATCGAAATGC
>TCONS_00003752
GGTACATTCTGCAAGCGCGCGCTCAGTACAGGTTTTGCAGAAAGGGACGATCGCGCGCATCAGCTTGTGTTTCACCTCAGTTCACCCTACATTTACCTTACAACATCACTATGCCGAAGTCAAAAGAAGTGCTGTCTTCAACCTCAGGCAGCGATTCGGACAGTGAAGTTGACACGAAGGCCAAGAGAAAGAAGCAGGCGACACCTGAAAAACCatcaaaaaagcaaaaaagcGGAGAAAGTTCATCTGCCTCcaaaagcagcagcagcaataAAAATGATAACATGTTCCAGatagGAAAGATGAGGTATGTGAGTGTTCGGGATTTTAAAGGAAAAGTGCTTATTGATATCCGGGAATACTGGATGGACCAAGAGGGTGAAATGAAACCAGGCAGGAAAGgTATTTCACTCAACCCAGAGCAGTGGAACCAACTAAAAGAGCAGATAAGTGAGATCGATGATGCCGTGAAGAGGACATAAGTCCTTCCTGCAGTTCACTGACAACCCGGATACTCTTTTTGAAACAGATTTTCACTTCACACTCCTGCCTATCCTGCCATTTTAAGGTTTTATTAAAGtagttgttcattgtttgatGCCTTTTCTATTTGAGCCTTTCAACGTGTTGGTTTTAAAAGGGGTTGGATAGAGAGATGACTGGTTTTAGCTTGTGCCCTGAATTTTCAATAAAGTTGATCGAAATGCACAACAA
>TCONS_00003753
TTCAGTATGCCGAAGTCAAAAGAAGTGCTGTCTTCAACCTCAGGCAGCGATTCGGACAGTGAAGTTGACACGAAGGCCAAGAGAAAGAAGCAGGCGACACCTGAAAAACCatcaaaaaagcaaaaaagcGGAGAAAGTTCATCTGCCTCcaaaagcagcagcagcaataAAAATGATAACATGTTCCAGatagGAAAGATGAGGTATGTGAGTGTTCGGGATTTTAAAGGAAAAGTGCTTATTGATATCCGGGAATACTGGATGGACCAAGAGGGTGAAATGAAACCAGGCAGGAAAGgTATTTCACTCAACCCAGAGCAGTGGAACCAACTAAAAGAGCAGATAAGTGAGATCGATGATGCCGTGAAGAGGACATAAGTC

Function

symbol description
sub1a Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SUB1 (SUB1 regulator of transcription).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-151 Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SUB1 (SUB1 regulator of transcription).

Ensembl:

ensembl_id ENSDARG00000053446

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003751 False 734 mRNA 0.43 5 8091144 8098092
TCONS_00003752 False 714 mRNA 0.43 5 8091144 8098099
TCONS_00003753 True 381 mRNA 0.44 4 8091690 8097870

Neighbor

gene id symbol gene type direction distance location
XLOC_001902 NA coding upstream 53255 8036184 ~ 8037889 (+)
XLOC_001901 NA coding upstream 98685 7988025 ~ 7992459 (+)
XLOC_001900 NA coding upstream 106562 7978517 ~ 7984582 (+)
XLOC_001899 NA coding upstream 189256 7870609 ~ 7901888 (+)
XLOC_001898 NA coding upstream 241271 7843406 ~ 7849873 (+)
XLOC_001904 pstpip2 coding downstream 3630 8101729 ~ 8142213 (+)
XLOC_001905 mtrex coding downstream 99728 8197827 ~ 8266094 (+)
XLOC_001906 CU682363.1 coding downstream 245089 8343188 ~ 8343305 (+)
XLOC_001907 hvcn1 coding downstream 303830 8401929 ~ 8412964 (+)
XLOC_001908 pptc7b coding downstream 339831 8437930 ~ 8468949 (+)
XLOC_001913 NA non-coding downstream 548860 8646959 ~ 8650855 (+)
XLOC_001917 NA non-coding downstream 611386 8709485 ~ 8715748 (+)
XLOC_001919 NA non-coding downstream 675337 8773436 ~ 8773659 (+)
XLOC_001921 BX571955.2 non-coding downstream 764422 8862521 ~ 8868895 (+)

Expression


Co-expression Network