XLOC_001904 (pstpip2)


Basic Information

Item Value
gene id XLOC_001904
gene name pstpip2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8101729 ~ 8142213 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003754
TTTTCGCAGTGAGCAAACAGCGGCAGCAGCAGCAATGAGAGAACAACATTTCAAGGATAATTTCTGGAACACCGATATCACCTCTACGGCTGGATATGACACCATCATCCAGCACTTGAATGATGGCAAGAGGACCTGTAAGGAAATCGAAGACTTCATGAAAGCCAGAGCTGCTATAGAAGAAAAATATGCCAAGGAGCTGCTGGGGTTGTCAAAAAAAGTGTGTGGACACAGTGAAATGAACACGTTGAAACGATCCCTTGATGTTTTCAAATTACAAACCGAAAACATGAGTTTATCTCATCTGCATTTGGCCCAAACTATGAGGGAGGAAGCCAAAAAATTAGAAGACTTCAGAGAGAAACAGAAAGAGGCCCGGAAAAAGgtagaacagcaaatggatgcTCTTCATAAACAGAAAGCCGCTCAATATAAGAAAACAGCTGAGGCAAAGAAGAGCTACGATCAAAAATGCAGAGACAAAGAGGAAACAGAGCAGAACATGAACAGAAGTGCCACCACTTGCAGTGCCAAGCAGCAAGAAAAGCTGTACGCCAAAACACAACAGGCCAAGCAGGCGGCAGAGGAAGCCG
>TCONS_00003755
ATGAGAGAACAACATTTCAAGGATAATTTCTGGAACACCGATATCACCTCTACGGCTGGATATGACACCATCATCCAGCACTTGAATGATGGCAAGAGGACCTGTAAGGAAATCGAAGACTTCATGAAAGCCAGAGCTGCTATAGAAGAAAAATATGCCAAGGAGCTGCTGGGGTTGTCAAAAAAAGTGTGTGGACACAGTGAAATGAACACGTTGAAACGATCCCTTGATGTTTTCAAATTACAAACCGAAAACATGAGTTTATCTCATCTGCATTTGGCCCAAACTATGAGGGAGGAAGCCAAAAAATTAGAAGACTTCAGAGAGAAACAGAAAGAGGCCCGGAAAAAGgtagaacagcaaatggatgcTCTTCATAAACAGAAAGCCGCTCAATATAAGAAAACAGCTGAGGCAAAGAAGAGCTACGATCAAAAATGCAGAGACAAAGAGGAAACAGAGCAGAACATGAACAGAAGTGCCACCACTTGCAGTGCCAAGCAGCAAGAAAAGCTGTACGCCAAAACACAACAGGCCAAGCAGGCGGCAGAGGAAGCCGACCGGATATACAGTCAGAATGTGTCTGTTTTAGGGAAGATGCGAGAGGAGTGGTTGAATGAGCATGTTAAAGCCTGTGAGTTTTTCGAGAAACAGGAAGTGGAGAGGATTAACACTTTGAGGAATATAGTGTGGACTCATCTCAATCATCTCTCCCAGCAGTGTGTCTCCAGTGATGAGaTCTATGAGGAAGTGAGGAAGTCTCTGGAGCAGTGTAACATTCAAGAAGACATTGAGCATTTTGTCAACCTCAGGAGGACCGGAGACAAACCACCAGCACCCATTCCATATGAGAACTTCTACAACAATCAGAGATCTGGTGTCGTTCGCTCACTTCCACCGCCCAGGTGA
>TCONS_00003756
ATGAGAGAACAACATTTCAAGGATAATTTCTGGGTTGGCAAACACTTGAAACATTTGTTGATGTATTTCTGTAACACCGATATCACCTCTACGGCTGGATATGACACCATCATCCAGCACTTGAATGATGGCAAGAGGACCTGTAAGGAAATCGAAGACTTCATGAAAGCCAGAGCTGCTATAGAAGAAAAATATGCCAAGGAGCTGCTGGGGTTGTCAAAAAAAGTGTGTGGACACAGTGAAATGAACACGTTGAAACGATCCCTTGATGTTTTCAAATTACAAACCGAAAACATGAGTTTATCTCATCTGCATTTGGCCCAAACTATGAGGGAGGAAGCCAAAAAATTAGAAGACTTCAGAGAGAAACAGAAAGAGGCCCGGAAAAAGgtagaacagcaaatggatgcTCTTCATAAACAGAAAGCCGCTCAATATAAGAAAACAGCTGAGGCAAAGAAGAGCTACGATCAAAAATGCAGAGACAAAGAGGAAACAGAGCAGAACATGAACAGAAGTGCCACCACTTGCAGTGCCAAGCAGCAAGAAAAGCTGTACGCCAAAACACAACAGGCCAAGCAGGCGGCAGAGGAAGCCGACCGGATATACAGTCAGAATGTGTCTGTTTTAGGGAAGATGCGAGAGGAGTGGTTGAATGAGCATGTTAAAGCCTGTGAGTTTTTCGAGAAACAGGAAGTGGAGAGGATTAACACTTTGAGGAATATAGTGTGGACTCATCTCAATCATCTCTCCCAGCAGTGTGTCTCCAGTGATGAGaTCTATGAGGAAGTGAGGAAGTCTCTGGAGCAGTGTAACATTCAAGAAGACATTGAGCATTTTGTCAACCTCAGGAGGACCGGAGACAAACCACCAGTATGCAAATCTTACATGTGCACTATATTTAAACATTCTTTTCTGGATGTTTACTCAATTCCCAACTCTTCACTTCATCTTCTATCTTCAGACGATCCTCTATACTCGACTGTAGCAGAGCCAGGGTACAGCATACTACGATACTAA

Function

symbol description
pstpip2 Predicted to enable actin binding activity. Predicted to act upstream of or within cell migration and cytoskeleton organization. Orthologous to human PSTPIP2 (proline-serine-threonine phosphatase interacting protein 2).

GO:

id name namespace
GO:0016477 cell migration biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-091204-90 Predicted to enable actin binding activity. Predicted to act upstream of or within cell migration and cytoskeleton organization. Orthologous to human PSTPIP2 (proline-serine-threonine phosphatase interacting protein 2).

Ensembl:

ensembl_id ENSDARG00000089569

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003754 False 593 mRNA 0.44 8 8101729 8130593
TCONS_00003755 False 909 mRNA 0.45 12 8101763 8141923
TCONS_00003756 True 1020 mRNA 0.43 13 8101763 8142213

Neighbor

gene id symbol gene type direction distance location
XLOC_001903 sub1a coding upstream 3630 8091144 ~ 8098099 (+)
XLOC_001902 NA coding upstream 63840 8036184 ~ 8037889 (+)
XLOC_001901 NA coding upstream 109270 7988025 ~ 7992459 (+)
XLOC_001900 NA coding upstream 117147 7978517 ~ 7984582 (+)
XLOC_001899 NA coding upstream 199841 7870609 ~ 7901888 (+)
XLOC_001905 mtrex coding downstream 55614 8197827 ~ 8266094 (+)
XLOC_001906 CU682363.1 coding downstream 200975 8343188 ~ 8343305 (+)
XLOC_001907 hvcn1 coding downstream 259716 8401929 ~ 8412964 (+)
XLOC_001908 pptc7b coding downstream 295717 8437930 ~ 8468949 (+)
XLOC_001909 BX682234.1 coding downstream 339447 8481660 ~ 8484001 (+)
XLOC_001898 NA non-coding upstream 251856 7843406 ~ 7849873 (+)
XLOC_001913 NA non-coding downstream 504746 8646959 ~ 8650855 (+)
XLOC_001917 NA non-coding downstream 567272 8709485 ~ 8715748 (+)
XLOC_001919 NA non-coding downstream 631223 8773436 ~ 8773659 (+)
XLOC_001921 BX571955.2 non-coding downstream 720308 8862521 ~ 8868895 (+)

Expression


Co-expression Network