XLOC_001905 (mtrex)


Basic Information

Item Value
gene id XLOC_001905
gene name mtrex
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8197827 ~ 8266094 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003757
CGCGGCCTGCGCATCGCACTCTGGGATTTGTGTCTGTTTGAAGACATGGCGGACGCCTTTGGAGACGATTTGTTCAGCGTGTTTGATGAAGAACAGGCCGGTTCCAGCAAAAAGGCCGCTCCAAAGTCCGCAGCTAATGCAGGGAAAACGCCTGATAAAGCTGGCAAACCACAGGGAGATTCAGCATCTTTGCGCAAAAGAGATGCTGATGATGATGGTCCTGATGAGATGCTGCTGGGGAAAAGGCAAAAGCTGGAAACGGTGTCAGCGGAGGAGATCAATCTGTCAGAGCTTATGCCGAAAGTGAAATCAGAGCAGGTGGAGACAGTGGAGGGCTGCACTCATGAGGTGGTTCTTCCTGCCAATGAGGAATACACTCCGCTGAAACCACGTGTTGGAAAAGCTGCCAAGGAGTATCCCTTCATACTCGACCCTTTCCAGCGCGAGGCCATCCTGTGCATCGATAACAACCAGTCTGTGCTTGTGTCGGCCCACACGTCAGCAGGAAAGACCGTGTGTGCCGAGTATGCCATTGCTCTGGCACTCAGAGAAAAGCAGCGTGTCATCTTCACCAGCCCCATCAAAGCTCTGAGCAACCAAAAGTACAGAGAGATGTACGAGGAGTTTCAGGATGTGGGGCTGATGACCGGTGATGTCACTATTAACCCCACTGCTTCCTGTCTGGTCATGACCACAGAGATTTTGAGGAGCATGCTGTACAGGGGGTCAGAGGTCATGAGGGAGGTGGCATGGGTCATCTTTGATGAGATCCATTACATGAGAGACTCAGAACGTGGCGTGGTCTGGGAAGAGACCATCATCCTGCTGCCAGATAATGTACACCATGTTTTCCTTTCTGCCACCATTCCTAATGCTAGACAGTTCGCAGAGTGGATTTGTCACCTCCACAAACAGccTTGTCACGTGGTGTACACAGACTACCGTCCCACTCCACTGCAGCACTACATCTTTCCAGCAGGGGGCGATGGACTCCATCTTGTCGTGGATGAGAACGGAGAGTTTAGAGAAGACAATTTTAACACCGCAATGCaggtccttagggatgcgggggaCACAGGAGGCAACACTGGGGCCAAATGGGACCCCAAAGGCAGAAAAGGTGGAACAAAAGGTCCATCTAACGTCTTCAAGATCGTGAAGATGATTATGGAGAGGAACTTCCAGCCGGTGATCATCTTCAGCTTCAGTAAGAAAGAGTGTGAGGCCTATGCTCTGCAAGTCTCCAAACTGGATTTCAACACAGACGAAGAGAAAAAACTGGTAGAAGAAGTGTTCAACAATGCCACAGACTGCCTCTCTGATGAGGACAAAAAACTGCCACAGGTGGAGCATGTGTTGCCGCTGCTCAAGAGAGGAATAGGCATTCATCATGGTGGCCTCTTGCCCATCCTGAAGGAGACCATTGAGATCCTCTTTTCTGAGGGGCTGCTGAAGGCCTTATTCGCTACAGAAACATTTGCCATGGGGATCAACATGCCTGCGCGAACCGTTCTCTTCACCAGTGCTCGAAAATTCGACGGCAAAGACTTCCGCTGGATCTCCTCTGGAGAGTATATCCAGATGTCAGGACGTGCCGGCAGAAGAGGAATGGACGAAAGGGGAATCGTCATATTCATGGTTGATGAGAAGATGAGCCCTGCAGTCGGCAAACAATTACTGAAGggtTCAGCAGATCCTCTGAACAGTGCGTTTCACCTGACCTACAACATGGTGCTCAATCTGCTGCGTGTGGAGGAGATCAACCCAGAGTACATGCTGGAGAAATCCTTTTACCAGTTCCAGCACTACAGAGCCGTGCCTGGCGTTGTGGATAGGATGAAAAAGCTGGAGGAGGAATATAACGCCATACGAATCCCCAAGGAGGAGAGCGTGGTGACCTACTACAAGATTCGCCAACAGTTGGCCAAATTGGGCAAAGAAATCGAGGAGTTTATTCACAAACCCAGATACTGCCTGCCCTTCTTACAGCCAGGCAGACTGGTCAAGGTAAAAAAAGAAGATCTGGATTTTGGTTGGGGTGTAGTCGTCAATTTCCAAAAGAAGTCAAATGTCAAGGCTGGCGGTGACCTTGATCCACTGTTTGTGGTGGAAGTTCTGGTTCACTGCAGTAAAGACAGCGTGAAGAACGCCGCCACGGAGTCAGCCAGACCCGCTGGCCCTGCAGAGAAGGGAGAGATGCAGGTCGTTCCTGTGATTCTTCATCTCATCACCTCTATTAGTTCTGTGCGCCTCTACATCCCTAAAGACCTGCGGCCCTATGATAACCGGCAGAGCATGCTCAAATCCATACAGGAGGTGCAGAAACGTTTCCCAGATGGGATACCGTTGCTGGATCCCATAGATGACATGGGAATCAAGGATCCCGCCCTGAAGAAGGTCATCCAGAAGGTGGAGGCATTCGAGCACAGGATGTACACGCACCCGCTGCACAGCGACCCCAACCTGGAGGCCGTTTACAAACTCTGTGAGAAGAAAGCGCTGATTGCGGGTGATATTAAAGCAGCAAAGCGAGAGCTAAAGAAAGCCCGCACCGTGTTGCAGATGGATGAGTTGAAGTGCAGAAAGCGTGTGCTGCGCCGACTGGGATTCGCTACTTCCTCTGATGTCATCGAGATGAAGGGCCGTGTGGCATGCGAGATCAGCAGTGCAGATGAGCTGCTGCTGACAGAGATGATGTTTAACGGCTTGTTCAATGACCTGACGGCGGAGCAGGCCACCGCTCTCCTCAGCTGCTTCGTCTTCCAGGAAAACGCCAACGAGATGCCCAAACTGACAGAGCAGCTGGGCGGTCCACTGAGACAGATGCAGGAATGTGCCAAGAGAATTGCTAAAGTGTCTGCAGAGGCCAAGCTGGAAGTGGACGAGGACAGTTACCTGAACCAGTTCCGTCCGCACCTGATGGATGTGGTCTACACCTGGGCCAATGGCTCTTCTTTCTCTCAGATTTGCAAAATGACAGACGTGTTTGAAGgcAGTATTATCCGCTGTATGCGCAGACTGGAGGAGCTCTTAAGGCAGATGTGCCAGGCAGCTAAGGCCATTGGAAACACAGAGTTGGAGAATAAGTTTGCAACCGGTATAACGAAGATTAAGAGGGATATCGTGTTTGCTGCAAGTCTATACCTCTAAATCCTAAGACTCCTTTTTTTTGGAtgttatttttgcataaaaacaCAGCAGGAGAGCAGAGACAtggaacataattgttttatttgtgttcgtCAACGAGCATAATGGATTTTTGTTTTCGTCATAAAAGCGCAACATTATTGTACatacaattttaacaattttaataaaaaaaagtctgta
>TCONS_00003758
CAGTGCAGATGAGCTGCTGCTGACAGAGATGATGTTTAACGGCTTGTTCAATGACCTGACGGCGGAGCAGGCCACCGCTCTCCTCAGCTGCTTCGTCTTCCAGGAAAACGCCAACGAGATGCCCAAACTGACAGAGCAGCTGGGCGGTCCACTGAGACAGATGCAGGAATGTGCCAAGAGAATTGCTAAAGTGTCTGCAGAGGCCAAGCTGGAAGTGGACGAGGACAGTTACCTGAACCAGTTCCGTCCGCACCTGATGGATGTGGTCTACACCTGGGCCAATGGCTCTTCTTTCTCTCAGATTTGCAAAATGACAGACGTGTTTGAAGGTAATGGCTCCCAACAAAAACTACTGGATCTGTTTGATTCATTGTGCAATACCTCTAGCTTAAATATCACACATTTTCCAATGTATTTATGATTCAATTTAAACCAGTAATTTTTTTGAAGGCACTTTTTATCCATAGTTCCCAAAAATGGCTTATTTTCGTACCCCATGTTTCCCAGAAATGAACAAATGCAATTAGTTTGGAGA

Function

symbol description
mtrex Predicted to enable RNA helicase activity. Acts upstream of or within fin regeneration and positive regulation of cell division. Predicted to be active in nucleus. Is expressed in blastomere; nervous system; and pectoral fin. Orthologous to human MTREX (Mtr4 exosome RNA helicase).

GO:

id name namespace
GO:0006401 RNA catabolic process biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0031101 fin regeneration biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2854 Predicted to enable RNA helicase activity. Acts upstream of or within fin regeneration and positive regulation of cell division. Predicted to be active in nucleus. Is expressed in blastomere; nervous system; and pectoral fin. Orthologous to human MTREX (Mtr4 exosome RNA helicase).

Ensembl:

ensembl_id ENSDARG00000013457

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003757 False 3333 mRNA 0.50 27 8197827 8266094
TCONS_00003758 True 535 lncRNA 0.45 3 8252143 8263324

Neighbor

gene id symbol gene type direction distance location
XLOC_001904 pstpip2 coding upstream 55614 8101729 ~ 8142213 (+)
XLOC_001903 sub1a coding upstream 99728 8091144 ~ 8098099 (+)
XLOC_001902 NA coding upstream 159938 8036184 ~ 8037889 (+)
XLOC_001901 NA coding upstream 205368 7988025 ~ 7992459 (+)
XLOC_001900 NA coding upstream 213245 7978517 ~ 7984582 (+)
XLOC_001906 CU682363.1 coding downstream 77094 8343188 ~ 8343305 (+)
XLOC_001907 hvcn1 coding downstream 135835 8401929 ~ 8412964 (+)
XLOC_001908 pptc7b coding downstream 171836 8437930 ~ 8468949 (+)
XLOC_001909 BX682234.1 coding downstream 215566 8481660 ~ 8484001 (+)
XLOC_001910 si:ch211-193e13.5 coding downstream 261102 8527196 ~ 8530065 (+)
XLOC_001899 NA non-coding upstream 295939 7870609 ~ 7901888 (+)
XLOC_001898 NA non-coding upstream 347954 7843406 ~ 7849873 (+)
XLOC_001913 NA non-coding downstream 380865 8646959 ~ 8650855 (+)
XLOC_001917 NA non-coding downstream 443391 8709485 ~ 8715748 (+)
XLOC_001919 NA non-coding downstream 507342 8773436 ~ 8773659 (+)
XLOC_001921 BX571955.2 non-coding downstream 596427 8862521 ~ 8868895 (+)

Expression


Co-expression Network