XLOC_001916 (si:dkey-27b3.4)


Basic Information

Item Value
gene id XLOC_001916
gene name si:dkey-27b3.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8688678 ~ 8697787 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003773
ATTGCATCACGAATGCATTGCCCAGTGATCCACCGCTCGTCCTGACATCGCACTCCTTtgtaaaagaagaagaaaacgGACAAACAATGGATTGTGCTGTTGACGATTTCAAGAGAATGCTTCATAATAAAGCATCTGGCCTGAAAGAGTCCTCTTCAGTTAAGAAGTGTGATGTCATATTGTACTTCTGCCCCATTACTTCACGAGCAGGAACTGATATTGATGCTGCAATGAAGCACCTTAATCAAATCACAAGTGACTTACAAGCTTCCAAACTTGCCATCGTTGTGGTGCTCCATATCACGTTTGACCCAGATAAAATAATATCTGACAGTGAAAAAATTATCAAGCAAGAGAACACATATGCTGTAGACTGTCTGCTTTGTGAAACTGATGGATTACTGGAATGTCAGAAGAATGCAGAAGCaattaaaaaaactgcaaatcACTTCAAAAGCAAGAAGATGATAGGAACACTTCTTCACCCATATACGAGAATACAGAAAGTACCCCGCTGATTCACAGTGACGACTCAAGTGAAGGAGTCATACAAAGACAAGAAGATGTACCAAGACATGAAGACAAACTAAGACAAGCAGACAAACTAAGACAAGATGCTTGTTGTTTTTGTGGGGTTTGCTTCTTCTTTTGTTGTGGTTGGCTTTGTGAATGTAAACCTTATAAAAGAATATGTGCATGTTGTCACTGTCAGAAATAATTTGTGGCTGTGTAGCTTGATGAAATCAAACTATCATGAaaacaactgt
>TCONS_00003774
ATTGTGCTGTTGACGATTTCAAGAGAATGCTTCATAATAAAGCATCTGGCCTGAAAGAGTCCTCTTCAGTTAAGAAGTGTGATGTCATATTGTACTTCTGCCCCATTACTTCACGAGCAGGAACTGATATTGATGCTGCAATGAAGCACCTTAATCAAATCACAAGTGACTTACAAGCTTCCAAACTTGCCATCGTTGTGGTGCTCCATATCACGTTTGACCCAGATAAAATAATATCTGACAGTGAAAAAATTATCAAGCAAGAGAACACATATGCTGTAGACTGTCTGCTTTGTGAAACTGATGGATTACTGGAATGTCAGAAGAATGCAGAAGCaattaaaaaaactgcaaatcACTTCAAAAGCAAGAAGCTGACTTCATTTTATTGCTTGACAAAAGATGATAGGAACACTTCTTCACCCATATACGAGAATACAGAAAGTACCCCGCTGATTCACAGTGACGACTCAAGTGAAGGAGTCATACAAAGACAAGAAGATGTACCAAGACATGAAGACAAACTAAGACAAGCAGACAAACTAAGACAAGATGCTTGTTGTTTTTGTGGGGTTTGCTTCTTCTTTTGTTGTGGTTGGCTTTGTGAATGTAAACCTTATAAAAGAATATGTGCATGTTGTCACTGTCAGAAATAATTTGTGGCTGTGTAGCTTGATGAAATCAAACTATCATGAaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-131 No description available

Ensembl:

ensembl_id ENSDARG00000093621

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003773 False 767 mRNA 0.39 4 8688678 8697787
TCONS_00003774 True 698 mRNA 0.38 4 8690936 8697780

Neighbor

gene id symbol gene type direction distance location
XLOC_001915 isl1l coding upstream 784 8680730 ~ 8687894 (+)
XLOC_001914 pmaip1 coding upstream 30994 8656417 ~ 8657684 (+)
XLOC_001913 NA coding upstream 37823 8646959 ~ 8650855 (+)
XLOC_001912 aplnrb coding upstream 57317 8629275 ~ 8631361 (+)
XLOC_001911 tbc1d10ab coding upstream 112460 8534750 ~ 8576218 (+)
XLOC_001917 NA coding downstream 11698 8709485 ~ 8715748 (+)
XLOC_001918 itga1 coding downstream 33201 8730988 ~ 8841038 (+)
XLOC_001919 NA coding downstream 75649 8773436 ~ 8773659 (+)
XLOC_001920 itga2.1 coding downstream 149246 8847033 ~ 8858205 (+)
XLOC_001921 BX571955.2 coding downstream 164734 8862521 ~ 8868895 (+)
XLOC_001906 CU682363.1 non-coding upstream 345373 8343188 ~ 8343305 (+)
XLOC_001902 NA non-coding upstream 650789 8036184 ~ 8037889 (+)
XLOC_001901 NA non-coding upstream 696219 7988025 ~ 7992459 (+)
XLOC_001900 NA non-coding upstream 704096 7978517 ~ 7984582 (+)
XLOC_001926 NA non-coding downstream 424606 9122393 ~ 9125863 (+)
XLOC_001937 CABZ01061749.1 non-coding downstream 1027987 9725774 ~ 9725891 (+)

Expression


Co-expression Network