Fish Transcriptome and Expression Database

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model fish

XLOC_001919

Basic Information

Item	Value
gene id	XLOC_001919
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007121.7
NCBI id	CM002894.2
chromosome length	45420867
location	8773436 ~ 8773659 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005681
CCCGAggacgtttctggagagcgcgaattaCGTAGCAAGAGATCCGTAtatcattatttcattttttaagcgaacgctacgggtggtatgatgccattccttttggTGATTACCGGCTCACCGCTTACCTCtctgtggagggctttcccgccacaaccagtttgtctagttagctcgtcgtgtacattGTTGGACTTGAGACATAGAGAGTGGTTGACCACGAc

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00005681	True	224	lncRNA	0.49	1	8773436	8773659

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_001917	NA	coding	upstream	57688	8709485 ~ 8715748 (+)
XLOC_001916	si:dkey-27b3.4	coding	upstream	75649	8688678 ~ 8697787 (+)
XLOC_001915	isl1l	coding	upstream	85542	8680730 ~ 8687894 (+)
XLOC_001914	pmaip1	coding	upstream	115752	8656417 ~ 8657684 (+)
XLOC_001913	NA	coding	upstream	122581	8646959 ~ 8650855 (+)
XLOC_001920	itga2.1	coding	downstream	73374	8847033 ~ 8858205 (+)
XLOC_001921	BX571955.2	coding	downstream	88862	8862521 ~ 8868895 (+)
XLOC_001922	itga2.3	coding	downstream	95809	8869468 ~ 8884205 (+)
XLOC_001923	itga2.2	coding	downstream	112110	8885769 ~ 8940896 (+)
XLOC_001924	fstb	coding	downstream	194544	8968203 ~ 8976823 (+)
XLOC_001906	CU682363.1	non-coding	upstream	430131	8343188 ~ 8343305 (+)
XLOC_001902	NA	non-coding	upstream	735547	8036184 ~ 8037889 (+)
XLOC_001901	NA	non-coding	upstream	780977	7988025 ~ 7992459 (+)
XLOC_001926	NA	non-coding	downstream	348734	9122393 ~ 9125863 (+)
XLOC_001937	CABZ01061749.1	non-coding	downstream	952115	9725774 ~ 9725891 (+)
XLOC_001938	NA	non-coding	downstream	1049538	9823197 ~ 9835446 (+)
XLOC_001939	NA	non-coding	downstream	1117032	9890691 ~ 9895543 (+)

Expression

Co-expression Network