XLOC_001920 (itga2.1)


Basic Information

Item Value
gene id XLOC_001920
gene name itga2.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8847033 ~ 8858205 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003777
TCGCTTCACTGTGACAGTTGGATTGAAGACAGCGCCTTCAGCTCTCTCATAATATTTTTAAGCAATGGACATAATGGAAAAGGCTGTGATTCTACTGGCATTACTGCAGTGTTTGTGTATTGCTCGCTCTCTGGGTTTTAATGTGGGGACTAAAGACGCCACAATCTTCTCAGGATCTGCAGGACAAGAGTTTGGATACACTGTACAACAGTTAAGCACTGACCAAGGAAAATGgTTATTGGTTGGTTCTCCCTGGAGTGGATTCCCTCGAAACAGAAAAGGAGACCTTTATAAGTGTGACATTGGTGATCCCAGAAACCCCTGCCAGAAACTAAACTTACAGGattctgtcatcattgatGGTGTGCAGAGTATCAACACCAACACGAGTCTGGGTCTGACTCTCATTCCTGTGAAAAAACGATTTATGACGTGTGGTCCTCTGTGGGCTCAGCGCTGTGGAAGTCAGTACTTTTACCCAGGAGTCTGTGCTGAAGTGACTCAACGCTTTACTCTCAAGTCAGCCTTTTCGCCCGCTATTCAAATTTGTGGTGGGCCAATGGATGTTGCCATTGTTTTAGATGGATCGAACAGTATTTACCCCTGGTCTGATGTTAAAAAATTTCTCTTAAACCTTTTGGAAAACCTTGATATTGGACCAGATCAAACTAGAGTAAAACAGGCTTTCCTACCAGAAAACGGTGGGCGTCCAGGTGCCACTAAGGTGCTGGTAGTGGTGACAGATGGAGAATCTGCTGATGGGTATAGAGGTCAAGAAGTCATTCAGAAACTTGACAGAGACGGCATCATTCGCTTTGGAATTGCTGTGAGTCAG

Function

symbol description
itga2.1 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000069390

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003777 True 835 mRNA 0.45 7 8847033 8858205

Neighbor

gene id symbol gene type direction distance location
XLOC_001918 itga1 coding upstream 5995 8730988 ~ 8841038 (+)
XLOC_001919 NA coding upstream 73374 8773436 ~ 8773659 (+)
XLOC_001917 NA coding upstream 131285 8709485 ~ 8715748 (+)
XLOC_001916 si:dkey-27b3.4 coding upstream 149246 8688678 ~ 8697787 (+)
XLOC_001915 isl1l coding upstream 159139 8680730 ~ 8687894 (+)
XLOC_001921 BX571955.2 coding downstream 4316 8862521 ~ 8868895 (+)
XLOC_001922 itga2.3 coding downstream 11263 8869468 ~ 8884205 (+)
XLOC_001923 itga2.2 coding downstream 27564 8885769 ~ 8940896 (+)
XLOC_001924 fstb coding downstream 109998 8968203 ~ 8976823 (+)
XLOC_001925 snx18b coding downstream 234610 9092815 ~ 9097996 (+)
XLOC_001913 NA non-coding upstream 196178 8646959 ~ 8650855 (+)
XLOC_001906 CU682363.1 non-coding upstream 503728 8343188 ~ 8343305 (+)
XLOC_001902 NA non-coding upstream 809144 8036184 ~ 8037889 (+)
XLOC_001926 NA non-coding downstream 264188 9122393 ~ 9125863 (+)
XLOC_001937 CABZ01061749.1 non-coding downstream 867569 9725774 ~ 9725891 (+)
XLOC_001938 NA non-coding downstream 964992 9823197 ~ 9835446 (+)
XLOC_001939 NA non-coding downstream 1032486 9890691 ~ 9895543 (+)

Expression


Co-expression Network