XLOC_001934 (si:ch211-243g18.2)


Basic Information

Item Value
gene id XLOC_001934
gene name si:ch211-243g18.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 9550419 ~ 9571012 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003795
CAGCACAGAAAACACCCTCCCTTCACTGACAACAGAGATCATGTCATCCAGTCTCTCAGTACGGAGCTTATCTCTGGGCCGGCAGCCTTCTTTCTCCAGCATGTCTCTGAGGGACAGTGGACGTGCCCGATCCAAAGCTGCGGTCTCTTTCGCTGCAGCCAAGCCTCTGTCTCGCTCTTCCTCCATGAGCATGTCAGATCTGAACGGCCTCGGCAGCATGTCTCTCAACGGCCTGCATGGCAACAGCACCAATGAAAAAGAGGCCATGCAAAGCCTGAACAGCCGATTGGCCAACTACCTAGATAAGGTGCGCTCTCTGGAGAAGTCCAACGCTGACCTGGAGCTGAGGCTCAAACAACTGATGCTGGACCGTGTGCCGAAAGGACACGATATCGATTCCATGATGGCCCAAGCTCATGCTCTCGAACAGGAAGTAAGGAAGAAAACTCTGGAGAATGCTCGGATCATGCTTGAGATCGATAATGCCAAGTTGGCTGCAGATGATTTCAGAATCAAATGGGAGACGGAGAGCGCAATGTGTCAGTCGGTGGAACGAGACTGCGTGGCCCTGAAGAAAGCCAAGTCAGACCATGACCAGATCATCGCCACACTCCGTGGTGACCTGGACAGCCTGAAAGAAGAACTCTACTTCTTGAGGAAGAACCATGAGGAGGAAATGGACAGTCTGAGAGCCCGGATTGCTCAAGAGGATGTCAATGTGGAGGTGGATGCGGCCCGTGGGCCAGAGCTGGGGACTGTCCTCTCCGATCTCAGGTCTCAGTATGAAGGCATTGTCCAGAAGAACAAGGAGGAAGCTGAGAGCTGGTACCGTAAAAAGttggAGACAGTGCAGACGCAGGTGCGTGAGAGCAATGAAGCCCTGAGAGGAGCTCAGAGTGAACTCACCGAGAGGCAGCGCTTTCTGCAGACCCTGGAAGTGGAACTGGAGAGCCTTCATAAACAGGTGGCAGCTCTGGAAGGTAACCTGAGTGAGACGGGGCAGAAATACACCCTGGAGATGGAGCGTCTGCAGGCCACCCTGGCCCAGCTGGAGGACAGCCTGTCTCAGCTGCGTCTGGACATGCAGCGCAACAAGACTGACTACGAGCAGCTCCTGCGCATCAAGCAGAACCTGGAGATGGAGATCGCCACCTACAGGAGGCTGCTGGAGGGCGAGGAGACGGTTAAAGAGATTCCTCCACCACCCAAGAAAGAGCCTGACGTTCGTACCCGCAAGATAGTAAAGGTGGTAACGCAAACCATGATCAATGGTAAAGTCGTGGACGAATCCAGCGAAGTCGAACAGATTGAGGAGACAAAGAAGTAAAACAAGAACAAGACTGTCTGTGTGATTCTCCATATAAAAGCCTCTATTGTCCATTTAGAAGCTGCATTACCTTTTGGCCC
>TCONS_00003796
ACAGAGATCATGTCATCCAGTCTCTCAGTACGGAGCTTATCTCTGGGCCGGCAGCCTTCTTTCTCCAGCATGTCTCTGAGGGACAGTGGACGTGCCCGATCCAAAGCTGCGGTCTCTTTCGCTGCAGCCAAGCCTCTGTCTCGCTCTTCCTCCATGAGCATGTCAGATCTGAACGGCCTCGGCAGCATGTCTCTCAACGGCCTGCATGGCAACAGCACCAATGAAAAAGAGGCCATGCAAAGCCTGAACAGCCGATTGGCCAACTACCTAGATAAGGTGCGCTCTCTGGAGAAGTCCAACGCTGACCTGGAGCTGAGGCTCAAACAACTGATGCTGGACCGTGTGCCGAAAGGACACGATATCGATTCCATGATGGCCCAAGCTCATGCTCTCGAACAGGAAGTAAGGAAGAAAACTCTGGAGAATGCTCGGATCATGCTTGAGATCGATAATGCCAAGTTGGCTGCAGATGATTTCAGAATCAAATGGGAGACGGAGAGCGCAATGTGTCAGTCGGTGGAACGAGACTGCGTGGCCCTGAAGAAAGCCAAGTCAGACCATGACCAGATCATCGCCACACTCCGTGGTGACCTGGACAGCCTGAAAGAAGAACTCTACTTCTTGAGGAAGAACCATGAGGAGGAAATGGACAGTCTGAGAGCCCGGATTGCTCAAGAGGATGTCAATGTGGAGGTGGATGCGGCCCGTGGGCCAGAGCTGGGGACTGTCCTCTCCGATCTCAGGTCTCAGTATGAAGGCATTGTCCAGAAGAACAAGGAGGAAGCTGAGAGCTGGTACCGTAAAAAGttggAGACAGTGCAGACGCAGGTGCGTGAGAGCAATGAAGCCCTGAGAGGAGCTCAGAGTGAACTCACCGAGAGGCAGCGCTTTCTGCAGACCCTGGAAGTGGAACTGGAGAGCCTTCATAAACAGGTGGCAGCTCTGGAAGGTAACCTGAGTGAGACGGGGCAGAAATACACCCTGGAGATGGAGCGTCTGCAGGCCACCCTGGCCCAGCTGGAGGACAGCCTGTCTCAGCTGCGTCTGGACATGCAGCGCAACAAGACTGACTACGAGCAGCTCCTGCGCATCAAGCAGAACCTGGAGATGGAGATCGCCACCTACAGGAGGCTGCTGGAGGGCGAGGAGACGGTTAAAGAGATTCCTCCACCACCCAAGAAAGAGCCTGACGTTCGTACCCGCAAGATAGTAAAGGTGGTAACGCAAACCATGATCAATGGTAAAGTCGTGGACGAATCCAGCGAAGTCGAACAGATTGAGGAGACAAAGAAGTAAAACAAGAACAAGACTGTCTGTGTGATTCTCCATATAAAAGCCTCTATTGTCCATTTAGAAGCTGCATTACCTTTTGGCCCCAGCGGGCCCCTGATTTTTGTTTCATTCCCAGTCTTTCAAAGAGATCGTCTTTCCTTTCTCAAGCAACAAAAAGAGGTGAAATTACTAGGAAAGCCATCAGATTTAGAGCTGAAACTGAAGAAGAAACAAGTGACAAGTGTTCCTGTTATTGCATTTAGGCACTTGTCAGACCAAATTCTTTCTGCATGCAATATTTATTTCTCAGTAGTGTAGCGTGAGGATGACTTTATTTACCTAAAAGTTTGCTTCTCTGTTATTGTTTTCAATCTTTACCCATATTAAAAACTATTCTGTGCAAACTGCA
>TCONS_00003797
CAGCGCTTTCTGCAGACCCTGGAAGTGGAACTGGAGAGCCTTCATAAACAGGTGGCAGCTCTGGAAGGTAACCTGAGTGAGACGGGGCAGAAATACACCCTGGAGATGGAGCGTCTGCAGGCCACCCTGGCCCAGCTGGAGGACAGCCTGTCTCAGCTGCGTCTGGACATGCAGCGCAACAAGACTGACTACGAGCAGCTCCTGCGCATCAAGCAGAACCTGGAGATGGAGATCGCCACCTACAGGAGGCTGCTGGAGGGCGAGGAGACGGTTAAAGAGATTCCTCCACCACCCAAGAGTGAGTTCTCATCCATTCTCAATGTGTCACTTGTTGGATTCAGCAAACAGTAGATCAAATATGCACAAACTAAACTTGCTTCTAACAAACATTTGACTAGAAGTGCATATTGCATTAGCTGAATGTAAAAACTGTAACATGGTATTATCTCAGTGGGATAGTTTTTAGttgtaaaatttgcatttaatttactcCATCTAATGTGTAGGTGATTTTTTTATcctcagtagaacattaaagaagtttttagctgaa

Function

symbol description
si:ch211-243g18.2 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament.

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2830 Predicted to enable structural molecule activity. Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDARG00000044261

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003795 False 1407 mRNA 0.53 9 9550419 9570707
TCONS_00003796 False 1681 mRNA 0.50 8 9553935 9571012
TCONS_00003797 True 553 mRNA 0.46 3 9561066 9565674

Neighbor

gene id symbol gene type direction distance location
XLOC_001933 ndufa8 coding upstream 130425 9410304 ~ 9419994 (+)
XLOC_001932 lhx6 coding upstream 155199 9372702 ~ 9395220 (+)
XLOC_001931 rbm18 coding upstream 179475 9346383 ~ 9370944 (+)
XLOC_001930 slc37a4b coding upstream 265245 9281991 ~ 9285174 (+)
XLOC_001929 paqr3b coding upstream 314973 9222476 ~ 9235446 (+)
XLOC_001935 rc3h2 coding downstream 24563 9595575 ~ 9661896 (+)
XLOC_001936 rabgap1 coding downstream 126085 9697097 ~ 9810597 (+)
XLOC_001937 CABZ01061749.1 coding downstream 154762 9725774 ~ 9725891 (+)
XLOC_001938 NA coding downstream 252185 9823197 ~ 9835446 (+)
XLOC_001939 NA coding downstream 319679 9890691 ~ 9895543 (+)
XLOC_001926 NA non-coding upstream 424556 9122393 ~ 9125863 (+)
XLOC_001921 BX571955.2 non-coding upstream 681524 8862521 ~ 8868895 (+)
XLOC_001919 NA non-coding upstream 776760 8773436 ~ 8773659 (+)
XLOC_001917 NA non-coding upstream 834671 8709485 ~ 8715748 (+)
XLOC_001913 NA non-coding upstream 899564 8646959 ~ 8650855 (+)
XLOC_001940 BX248503.1 non-coding downstream 342051 9913063 ~ 9913177 (+)
XLOC_001941 AL935269.1 non-coding downstream 607089 10178101 ~ 10195602 (+)

Expression


Co-expression Network