XLOC_019407 (dnajc21)


Basic Information

Item Value
gene id XLOC_019407
gene name dnajc21
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 11179914 ~ 11199366 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038264
GTTCATCTGTAGACACGAAATATGTAAACCGTTTAAGAAATACACGAAAAAGCGCGGTCAACGGCTTCTTTATCGTTTTATTTGTAGTGTATAGAAGTAATTATTTGGTTAGCGTTGTTATAGTTTTAGTTTTGTGATCCACGTGGGCTTATTGATGTCATTTCGCATGTGCTTCAGTTATTGACAACGGTTGGCAACACGTCGCCTTTATAGTTTGTTCAGGGTCTTCTTCAAGTCCAGACCAGCATGAAGTGTCACTATGAAGTGCTGGGCGTTAAAAGAGACGCATCCGACGACGACCTAAAAAAGGCGTATAGGAAATTAGCCTTGAAATGGCATCCAGATAAGAATCTGGATAACGCAGAGGACGCTGCAGAACAGTTTAAGCTGATCCAGGCTGCATATGATGTTCTGAGTGACCCACAGGAGAGAGCCTGGTATGATAACCACCGAGAGGCGCTGCTGAAAGGGGGCGTCAGTGGAGAGTACCAGGATGACAGCATTGATCTTGTGCAGTTCTTCACGGTCACCTGTTACTTCGGTTATGGAGATGATGAAAAGggCTTTTATGCGGTCTACAGGAATGTGTTTGAGTCAATCGTGATGGAAGAGAAGGAGCACAGTAAAGATGAGGAAGACGAGGAGGATGAGTTTCCCTCGTTTGGAGAATCCGAGAGTGACTACGACACTGTGGTGCATTTATTTTATGGCTACTGGCAGAGCTTCTGTACACGGAAGAACTTTGCGTGGAAGGAGGAATACGACACGCGACAGGCCTCCAACCGCTGGGAGAAGAGAGCCATGGAGAAGGAGAACAAGAAAACCAGAGACAAGGCCAGGAAGGAGCACAGCGAGCTGGTGCGGCAACTAGTGGCCTTCGTCCGCAAGCGAGACAAGCGTGTGCAGGCTCATAAGAAGCTGGTGGAGGAGCAGAACGCAGAGAAGGCCAAGAAAGTGGAAGAACTGAGGAGAAAACAGAAGCTCAGCCAGGCCAAGCTTGCTGAAGACTATCAGGAGCAGAGCTGGACTGCAATGTCTGAGCTGGAGAAGGAGCTGCAGCAGATGGAGGCTGAATATGGACAGGAGTTTGGAGACGCCTCCGACAGTGAGGAGAACGAGGAGGAGCTGGAGAGTCGGGACATAGCAAATGTGGATGGCGTTGATGCTGTGATGGCAGATGGTGCTGCAGAAATGGACGACTATTATGATGACCTCTACTGTCCGGCCTGTGACAAATCTTTCAAATCCGATAAAGCCATGAAAAACCACTCAAAATCAAAGAAGCACAGAGAGATGGTGGCACTGCTGAGACAACAGCTGGAGGAGGAAGATGAGTCTCTGAGTCAAAACTGTGCTGAGAGAGAAGAGGACgatgaagaagaagatgatgatgatgatgatgaacaaaATGACACATCCAAACAAAAGCTCTCTAAAAGGCAGAAGAAAAAGAAGCGTCAGCAAAAACCTGTAAATAATCTTCCAGAAGCACCGGAGACAGTCAGTCCAGTCCCACAGTCCACAGAAGAGCATCTTTCCCCTGCACCTGATTCGGGCAACACTGAGGACACCCCTGTTCCGTCTGAGGACCCAGATGACAGTGTAAAGCCAGACGGACAGGAAAACACAAACCAAAAAAGcaCTGCAAAGACGAAAGGGAAGAAAGGCGGAAAAGACTCTAAAAAGGGCAGCAAAGCACATGGAGGTGTGGAAGCTGCACCAGAGAAGGAAGTGAACCTGCGCTGTGTGACCTGCCAGTATGAATTCACCACCAGAAACAAGCTTTTCGATCATCTAAAAAGCACAGGTCACGCCACCGCGCTCTCCTCCAGTAACACCAGCCAAACCAGCAAGAAAAAGAAGGACTCCAGGAAAAACAGATAACCAGAAACACAATTAAAGACTCCGCATTTCCCCAAACAAACTGCTTTTAAACCACTTGTTTGATGAAATGCAACAATCAGAAAACACTTTTAAGGACCCCTCTGTGCTTTTCTGCCCATAAGAGAATAAAACGTCTCTTTTGTAACATGGTATATGTTAAATAATTTCCCTAAACGCCCATTTATACCTATCGTAATTGACGTGTAATCTTGTGCAAATGAGACTTTTGGAGTAAACCCTGTCGTTTTTGTGCTTTTAAGTAGTCGAGTAAAGCTAAAGATGGCATGCGTTGTCACATTTACACAGTCACCATTTCAACCTGTCAAATTCAAAGTGAGGATTAAAACTCTACTGGATGTTTTG

Function

symbol description
dnajc21 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human DNAJC21 (DnaJ heat shock protein family (Hsp40) member C21).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8928 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human DNAJC21 (DnaJ heat shock protein family (Hsp40) member C21).

Ensembl:

ensembl_id ENSDARG00000105195

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038264 True 2247 mRNA 0.46 12 11179914 11199366
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_019406 NA coding downstream 2732 11174965 ~ 11177182 (-)
XLOC_019405 nedd4l coding downstream 125038 10890258 ~ 11054876 (-)
XLOC_019403 NA coding downstream 293205 10842456 ~ 10886709 (-)
XLOC_019404 dre-mir-122 coding downstream 298416 10881423 ~ 10881498 (-)
XLOC_019402 grp coding downstream 406570 10765886 ~ 10773344 (-)
XLOC_019408 rtkn2b coding upstream 57059 11256425 ~ 11327830 (-)
XLOC_019409 zgc:162472 coding upstream 130868 11330234 ~ 11367271 (-)
XLOC_019410 NA coding upstream 200002 11399368 ~ 11415423 (-)
XLOC_019411 NA coding upstream 216388 11415754 ~ 11434017 (-)
XLOC_019412 NA coding upstream 275150 11474516 ~ 11489535 (-)
XLOC_019401 NA non-coding downstream 611296 10542978 ~ 10568618 (-)
XLOC_019399 NA non-coding downstream 1007553 10160149 ~ 10172361 (-)
XLOC_019413 NA non-coding upstream 347257 11546623 ~ 11549845 (-)
XLOC_019414 NA non-coding upstream 351311 11550677 ~ 11557687 (-)

Expression

Expression of XLOC_019407(dnajc21) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Expression of XLOC_019407(dnajc21) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 125.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_12684154_12695960 DNAJC21 coding CI01000006 null 12683561 ~ 12696396 (+)