XLOC_001941 (AL935269.1)


Basic Information

Item Value
gene id XLOC_001941
gene name AL935269.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10178101 ~ 10195602 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003804
GCTTTCTTGCACTGAGCATCAACCCTAAGCAGCGGAAGTGGACACTTCTGTCTCAACATACACATACAAGAGACATAAGTCAAATCTGTTGCTGCCCGTCCCAGAAAACCACCATCAGCATCCTGCCGGACATACAAGAGGCTAAACCATGATCAAGCGCAAGCTGAGCTTCAAGTGGTTTGGTAGCCTCACAAACCTCCGGCGGAAATCAGATGCGCAGAAAGATGACGAATCAGTCAAAGAAATGTCCACCGACGACATGGGCATGCATCCACGAAGCCCGAGCTATGCCACCTCTAGTGAAATGTACACACACATGGGCACCATGCCGCGCCATTCTAAGAAGGACAAAAACTCGAAAAAGAGCAAGACCAAAGACAAGGCCAACCTCACTCGGAGCCAAAGCTTGAGACCAGACCATGTGGTTGAATCTCCTCTCCTTAGTATGCTTTCTGGAAAGGGGCTGGAGGTTCTGGAAAACCCCATTATTGAAGACAAGACGGCTTACATCCAGAATCGAGACCTTCCACCTCCTCCATGTGTGGATGGACACTCAACAAGGCTGGAAGATGAAAATAAGAAGCTTGAAGTAAACTTCAAACATGTTGATGCATCGAATGCATGTCTGGGAGCTTCAATAGAACTATGCGTGAGCCAAGAGTCAACGGTCCAGCCAGTGTTGCCCAAGAAGAGACTTAAAGAAGGAGACAAACTGATGAAGGACACTGAGGAGCTCAAGGAGGACAATAACTTGATCCAGTTGCCTCAGAAGACTGGCAACCAGATGGAGAAGAAGATAGCAGTAGAAGAAGATGCTAATATAGTGTGGAACTATAAACTTGACGGCCAAGAAGAGAAGGAGTTAAACAGTGAACTGGACATCACAGAAAACCAGGGAGAATATGTGGAGGTAAggctgttttcttttaaacaagaaGTCAATGGGTAAAGTGTGTTTAAACTAGACAATCTCTCATTGTTAATGAGAAGAATCTGGAAGGAATTTCCTTAAGATCTGTCTGGTCTTTGATTTAGGCTATATttttagactttctccagacagcATGCTGAATATGGCTATTTCATGCTTAATTAGGCAAAATCCCTGTATTCATTACCTAAAAGCACCATTTTAGATGTAATAAGAAATTAATCTAATGAGGTCTTTTGAAATGTGCTGATTTGGTACAAATTAATGTCCTTTCTAGCCCTGTTCTTACTTGCAGCCATTAAGATATTAGATTCTCCATTTAATTGCTGTGTAGTAAACTCTGTCACCTCAAGATGGCGCTGCGAACTGGCTTTGAATTCTTGAAGAAAAAGTAGAGAAAGaaacttcaaaacatttttttcattttctgtcggCATAGTTTCTGATTTATTAGAAATCTC
>TCONS_00005686
AAGAGACATAAGTCAAATCTGTTGCTGCCCGTCCCAGAAAACCACCATCAGCATCCTGCCGGACATACAAGAGGCTAAACCATGATCAAGCGCAAGCTGAGCTTCAAGTGGTTTGGTAGCCTCACAAACCTCCGGCGGAAATCAGATGCGCAGAAAGATGACGAATCAGTCAAAGAAATGTCCACCGACGACATGGGCATGCATCCACGAAGCCCGAGCTATGCCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117790

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003804 False 1392 lncRNA 0.43 3 10178101 10195602
TCONS_00005686 True 226 lncRNA 0.51 2 10178168 10187258

Neighbor

gene id symbol gene type direction distance location
XLOC_001940 BX248503.1 coding upstream 264924 9913063 ~ 9913177 (+)
XLOC_001939 NA coding upstream 282558 9890691 ~ 9895543 (+)
XLOC_001938 NA coding upstream 342655 9823197 ~ 9835446 (+)
XLOC_001936 rabgap1 coding upstream 367504 9697097 ~ 9810597 (+)
XLOC_001937 CABZ01061749.1 coding upstream 452210 9725774 ~ 9725891 (+)
XLOC_001942 sh2d3ca coding downstream 14853 10210455 ~ 10274162 (+)
XLOC_001943 NA coding downstream 92546 10288148 ~ 10295789 (+)
XLOC_001944 urm1 coding downstream 117422 10313024 ~ 10326025 (+)
XLOC_001945 cercam coding downstream 156083 10351685 ~ 10380131 (+)
XLOC_001946 sardh coding downstream 190833 10386435 ~ 10564968 (+)
XLOC_001926 NA non-coding upstream 1052238 9122393 ~ 9125863 (+)
XLOC_001954 CR931761.1 non-coding downstream 920252 11115854 ~ 11115970 (+)
XLOC_001955 NA non-coding downstream 1064552 11260154 ~ 11312342 (+)
XLOC_001959 BX640403.1 non-coding downstream 1303091 11498693 ~ 11498809 (+)
XLOC_001960 NA non-coding downstream 1317784 11513386 ~ 11518739 (+)

Expression


Co-expression Network