XLOC_001941 (AL935269.1)


Basic Information

Item Value
gene id XLOC_001941
gene name AL935269.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10178101 ~ 10195602 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003804
GCTTTCTTGCACTGAGCATCAACCCTAAGCAGCGGAAGTGGACACTTCTGTCTCAACATACACATACAAGAGACATAAGTCAAATCTGTTGCTGCCCGTCCCAGAAAACCACCATCAGCATCCTGCCGGACATACAAGAGGCTAAACCATGATCAAGCGCAAGCTGAGCTTCAAGTGGTTTGGTAGCCTCACAAACCTCCGGCGGAAATCAGATGCGCAGAAAGATGACGAATCAGTCAAAGAAATGTCCACCGACGACATGGGCATGCATCCACGAAGCCCGAGCTATGCCACCTCTAGTGAAATGTACACACACATGGGCACCATGCCGCGCCATTCTAAGAAGGACAAAAACTCGAAAAAGAGCAAGACCAAAGACAAGGCCAACCTCACTCGGAGCCAAAGCTTGAGACCAGACCATGTGGTTGAATCTCCTCTCCTTAGTATGCTTTCTGGAAAGGGGCTGGAGGTTCTGGAAAACCCCATTATTGAAGACAAGACGGCTTACATCCAGAATCGAGACCTTCCACCTCCTCCATGTGTGGATGGACACTCAACAAGGCTGGAAGATGAAAATAAGAAGCTTGAAGTAAACTTCAAACATGTTGATGCATCGAATGCATGTCTGGGAGCTTCAATAGAACTATGCGTGAGCCAAGAGTCAACGGTCCAGCCAGTGTTGCCCAAGAAGAGACTTAAAGAAGGAGACAAACTGATGAAGGACACTGAGGAGCTCAAGGAGGACAATAACTTGATCCAGTTGCCTCAGAAGACTGGCAACCAGATGGAGAAGAAGATAGCAGTAGAAGAAGATGCTAATATAGTGTGGAACTATAAACTTGACGGCCAAGAAGAGAAGGAGTTAAACAGTGAACTGGACATCACAGAAAACCAGGGAGAATATGTGGAGGTAAggctgttttcttttaaacaagaaGTCAATGGGTAAAGTGTGTTTAAACTAGACAATCTCTCATTGTTAATGAGAAGAATCTGGAAGGAATTTCCTTAAGATCTGTCTGGTCTTTGATTTAGGCTATATttttagactttctccagacagcATGCTGAATATGGCTATTTCATGCTTAATTAGGCAAAATCCCTGTATTCATTACCTAAAAGCACCATTTTAGATGTAATAAGAAATTAATCTAATGAGGTCTTTTGAAATGTGCTGATTTGGTACAAATTAATGTCCTTTCTAGCCCTGTTCTTACTTGCAGCCATTAAGATATTAGATTCTCCATTTAATTGCTGTGTAGTAAACTCTGTCACCTCAAGATGGCGCTGCGAACTGGCTTTGAATTCTTGAAGAAAAAGTAGAGAAAGaaacttcaaaacatttttttcattttctgtcggCATAGTTTCTGATTTATTAGAAATCTC
>TCONS_00005686
AAGAGACATAAGTCAAATCTGTTGCTGCCCGTCCCAGAAAACCACCATCAGCATCCTGCCGGACATACAAGAGGCTAAACCATGATCAAGCGCAAGCTGAGCTTCAAGTGGTTTGGTAGCCTCACAAACCTCCGGCGGAAATCAGATGCGCAGAAAGATGACGAATCAGTCAAAGAAATGTCCACCGACGACATGGGCATGCATCCACGAAGCCCGAGCTATGCCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117790

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003804 False 1392 lncRNA 0.43 3 10178101 10195602
TCONS_00005686 True 226 lncRNA 0.51 2 10178168 10187258
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_001940 BX248503.1 coding upstream 264924 9913063 ~ 9913177 (+)
XLOC_001939 NA coding upstream 282558 9890691 ~ 9895543 (+)
XLOC_001938 NA coding upstream 342655 9823197 ~ 9835446 (+)
XLOC_001936 rabgap1 coding upstream 367504 9697097 ~ 9810597 (+)
XLOC_001937 CABZ01061749.1 coding upstream 452210 9725774 ~ 9725891 (+)
XLOC_001942 sh2d3ca coding downstream 14853 10210455 ~ 10274162 (+)
XLOC_001943 NA coding downstream 92546 10288148 ~ 10295789 (+)
XLOC_001944 urm1 coding downstream 117422 10313024 ~ 10326025 (+)
XLOC_001945 cercam coding downstream 156083 10351685 ~ 10380131 (+)
XLOC_001946 sardh coding downstream 190833 10386435 ~ 10564968 (+)
XLOC_001926 NA non-coding upstream 1052238 9122393 ~ 9125863 (+)
XLOC_001954 CR931761.1 non-coding downstream 920252 11115854 ~ 11115970 (+)
XLOC_001955 NA non-coding downstream 1064552 11260154 ~ 11312342 (+)
XLOC_001959 BX640403.1 non-coding downstream 1303091 11498693 ~ 11498809 (+)
XLOC_001960 NA non-coding downstream 1317784 11513386 ~ 11518739 (+)

Expression

Expression of XLOC_001941(AL935269.1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Expression of XLOC_001941(AL935269.1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network