XLOC_001942 (sh2d3ca)


Basic Information

Item Value
gene id XLOC_001942
gene name sh2d3ca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10210455 ~ 10274162 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003805
gagagggagagagagaggaagccGGTGCGGATCTGGGATGACACTTGCTCCAGTGGAACGGCGATAGCACTGATCAGTTGCGGCTGTGGCTTGTGCACGGGTGAACGCAAGGGGATAGGGGCATGACCCGGGGTTTCTAGAGGACTCCAGGGGTGGAAGAGTCGAAGAGAGGAGGACCGGAGCCATGACGGAGAGATGCAGCCTGTGGAGTGCCCTGTCAGCGGCTGCCTGCTGCTTCTACAGGGGCTCCTTCATGCAGGTGCAGTTCTCCAAGGAGAAGTACCTGCTGGAGTCTCCTCCAGAGAAACTCAGGAAGGAGCTGGAGGAGGAACTCAAACTCAGCAGCAGTGACATGAGGAGCCACGGCTGGTACCATGGCCATATTCCACGAGAGGCCTCTGAAACCTTGGTCCTACGCAGCGGCGACTTCCTAGTACGGGACTCCTTGTCAACAGTGGGCGACTATGTCCTGACCTGTCGCTGGCAGCAAGAAGTGATACACTGTCGGATCAGTAAAGTCCTGGTCAAAAGCGGACAAACTAAAATCCAGTACATGCTGGAGAATGAGAGCTTCGATTCTGTCCCCACGCTGGTAAGGCACCACGCTGGTACAGGTCGAGCAGTGTGTCCACGAACAGGAGCCCAGCTGCTGTGTCCGGTGAACCGAACGCTGCCACTGAGGTACCTGGAGGCCACGTTTGCTTTAGCTGGAGGAAGACCTGGATCTGCATATTCACCATCTGCCCAGAGGGGGGCGCATATCAAAAGACGCAGTGTTACTATGACAGATGGACTCACGACAGAGAAGATCATTCCTCACAGCCCTTCCACAGTGCACCATAAGGATGCCATGAGGAACTGTGCCATGAGTATGGATCAGATCCAAGAGTACCGCTGTCCACTGTCCCCTGTGGGGGAAACACCTCAATCCCCTGCCTACAGCGCCATCTCCCGCCACAGACATGGTTCAGGTGGACGTGTGCTTGCCGTCATCCCGCCTTCTCCAGTGATGAGGCGCTCCAGCGATCCCCACCTTTCGCCATCCTCCTCCAATAACAACATTCCCTGCTCAGAAACGGGCCCTAGCACTTACTCCACACCTGCTCATGGGTACCAATCTGAGAGTTTAGAGCAAGGCGGCAGCTACTGTGAGCTGAGACCCGGACAAGCCCCCATTCCTCCCTGCAAGAGCTACGTAGAGAGGTTGAAGGTGGAGGAGGGCCAAAGCCTGGGCTCTGGAGCTCCAGACGGAGTGGAGGGCTTCATGCTCCCCCTGGTGGAGACTAGTTCATCCTTCAAACCAGGGAAATACCAGTCGACTCTTCTGCCACCTGAAAATAAACCTCTGGAGATGAGCGTGTTGAAGAGGGTGAAGGAGCTTCTGGCGGAGGTGGATCCCAAAACGGCCGCCAAGCACATCACCAAGGCTGACTGCAcgGTTGCTAGGATACTGGGCGTTACCAAGGAGATGCAGAGGATGATGGGAGTGAGCTCAGGGCTGGAGCAGCTGACTCTTCCTCATGGACATCAGTTGAGGCTGGATCTGCTGGAGAGGTTTTACACCATGTCAATAATGATGGCGGTGGATCTGTTAGGCTGTACAGGCAGCACGGAGGAGAGGGCAGCCCTTCTGCATAAAACTATCCAGCTGGCTGCTGAACTCAAGAGCAACATGGGTAACATGTACGGATTTGCTGCGGTCATGAGAGCCCTGGAGCTGCCGCAGATCTCTCGACTGGAGCAGACGTGGATGACACTGCGACAGAGACACACAGAAGGAGCCATTCTCTATGAGAAAAAACTCAAGCCATTTCTGAAGGCCATGAATGACGGCAAAGagacgTGTGTGCTGTCGAGTACGTGTTTCCCTCATGTGGTGCCAGTCTTGTCTCTGCTGGAGCGCAGTGTGGCAGCAGGAGAGGCTCTGGAGAGCTGGGAGAGTGTGGAGTCTGGTGTGGATGTGGTCATGAGTCACTTGGAGGCAGCCAGAACCATCGCTCACCATGGAGGACTGTACCGCACCAATGCAGAGAGCAAACTTCAGGATTTCCAGGAGCGAAAGGAGGTGTTGGAGATCTTCTGTACAGAGTTTCAGATGAGGCTTTTATGGGGCAGTCGTGGCTCTGAAGGCAGTCAAACGGAGCGTTATGAGAAATTCGATAAAGTCCTCACCGCTCTATCCCACAAGCTCGAACCTCCTGTACGACACAGTGAATTATAG

Function

symbol description
sh2d3ca Predicted to enable guanyl-nucleotide exchange factor activity and phosphotyrosine residue binding activity. Predicted to be involved in positive regulation of peptidyl-serine phosphorylation. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human SH2D3C (SH2 domain containing 3C).

GO:

id name namespace
GO:0033138 positive regulation of peptidyl-serine phosphorylation biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080102-1 Predicted to enable guanyl-nucleotide exchange factor activity and phosphotyrosine residue binding activity. Predicted to be involved in positive regulation of peptidyl-serine phosphorylation. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human SH2D3C (SH2 domain containing 3C).

Ensembl:

ensembl_id ENSDARG00000028099

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003805 True 2221 mRNA 0.55 10 10210455 10274162

Neighbor

gene id symbol gene type direction distance location
XLOC_001941 AL935269.1 coding upstream 14853 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 coding upstream 297278 9913063 ~ 9913177 (+)
XLOC_001939 NA coding upstream 314912 9890691 ~ 9895543 (+)
XLOC_001938 NA coding upstream 375009 9823197 ~ 9835446 (+)
XLOC_001936 rabgap1 coding upstream 399858 9697097 ~ 9810597 (+)
XLOC_001943 NA coding downstream 13986 10288148 ~ 10295789 (+)
XLOC_001944 urm1 coding downstream 38862 10313024 ~ 10326025 (+)
XLOC_001945 cercam coding downstream 77523 10351685 ~ 10380131 (+)
XLOC_001946 sardh coding downstream 112273 10386435 ~ 10564968 (+)
XLOC_001947 fam163ba coding downstream 362075 10636237 ~ 10700769 (+)
XLOC_001937 CABZ01061749.1 non-coding upstream 484564 9725774 ~ 9725891 (+)
XLOC_001954 CR931761.1 non-coding downstream 841692 11115854 ~ 11115970 (+)
XLOC_001955 NA non-coding downstream 985992 11260154 ~ 11312342 (+)
XLOC_001959 BX640403.1 non-coding downstream 1224531 11498693 ~ 11498809 (+)
XLOC_001960 NA non-coding downstream 1239224 11513386 ~ 11518739 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_05410915_05460560 SH2D3CA coding CI01000304 null 5410915 ~ 5460560 (-)
bowfin (Amia calva) AMCG00020119 NA coding CM030127.1 CM030127.1 10454027 ~ 10467852 (+)