XLOC_001943


Basic Information

Item Value
gene id XLOC_001943
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10288148 ~ 10295789 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005687
CTATTCTAaaagttttatgtttttaaattgtttgaaTATAATGTATACATAAACATGTCTGTGATATATTGTTTGCAGATGATTTTATTAAGATTAAGTAGTAGGCTTACTATAGACAGTGAACGTTGACAGCTTGATTTTACAAACTGATAGTTTGTAGACGGTCCCTCAAAAAAGCGATGACGTCACCTCCTTCATAGAGGTAAGCGTGTTTTTCTACTCCTTTAAAACGCCGAGTTTGACAGAAAAGTGTGGCGTACATTTTGCTCATAATCGACTACAACGctgTGTCAGTCAGAGAGAGGTCCACCAGGCGCTGCTGGCAGAGCGGCACACTGATGCAGACAGAGGCCCACTGAATGCCCACTCAGCGCACAAAGACCCACCCGAGCTGCCTGTCACACACCACTGTGCCCAAAAATACTGAGGAAATGCAGATGAAAATCTCTTATTGTGGTCTGTGAACTTACAAAAtaggacacacactctctctactCTGAAAAAGAACGGGACCGCATCAGTGCCAGAATGGGGAAGATTAAACAGTATATTAAGAGCACATTGGTTTGACATAAGTAAGATTCCTTAAATTTCGTTTAAACATGACTGATACTGCTGCAAATATAATCTGTTTCagtgcatttacactgaaaaaaattttgtcgaagatgattccttggatttacaattttttaatgtggttgtaaacaatttatttgggctgaataaatccaacaaattaagttaaaaattactaaatttaatttgtttgttgaaattcaaaatt
>TCONS_00005832
CTGATAGTTTGTAGACGGTCCCTCAAAAAAGCGATGACGTCACCTCCTTCATAGAGctgTGTCAGTCAGAGAGAGGTCCACCAGGCGCTGCTGGCAGAGCGGCACACTGATGCAGACAGAGGCCCACTGAATGCCCACTCAGCGCACAAAGACCCACCCGAGCTGCCTGTCACACACCACTGTGCCCAAAAATACTGAGGAAATGCAGATGAAAATCTCTTATTGTGGTCTGTGAACTTACAAAAtaggacacacactctctctactCTGAAAAAGAACGGGACCGCATCAGTGCCAGAATGGGGAAGATTAAACAGTATATTAAGAGCACATTGGTTTGACATAAGTAAGATTCCTTAAATTTCGTTTAAACATGACTGATACTGCTGCAAATATAATCTGTTTCagtgcatttacactgaaaaaaattttgtcgaagatgattccttggatttacaattttttaatgtggttgtaaacaatttatttgggctgaataaatccaacaaattaagttaaaaattactaaatttaatttgtttgttgaaattcaaaatttAAATCATTTGAAACTATTTTTGCAGACATAATTGTTTCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005687 False 787 lncRNA 0.37 2 10288148 10295748
TCONS_00005832 True 599 lncRNA 0.39 2 10288294 10295789

Neighbor

gene id symbol gene type direction distance location
XLOC_001942 sh2d3ca coding upstream 13986 10210455 ~ 10274162 (+)
XLOC_001941 AL935269.1 coding upstream 92546 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 coding upstream 374971 9913063 ~ 9913177 (+)
XLOC_001939 NA coding upstream 392605 9890691 ~ 9895543 (+)
XLOC_001938 NA coding upstream 452702 9823197 ~ 9835446 (+)
XLOC_001944 urm1 coding downstream 17235 10313024 ~ 10326025 (+)
XLOC_001945 cercam coding downstream 55896 10351685 ~ 10380131 (+)
XLOC_001946 sardh coding downstream 90646 10386435 ~ 10564968 (+)
XLOC_001947 fam163ba coding downstream 340448 10636237 ~ 10700769 (+)
XLOC_001948 swi5 coding downstream 433081 10728870 ~ 10737250 (+)
XLOC_001937 CABZ01061749.1 non-coding upstream 562257 9725774 ~ 9725891 (+)
XLOC_001954 CR931761.1 non-coding downstream 820065 11115854 ~ 11115970 (+)
XLOC_001955 NA non-coding downstream 964365 11260154 ~ 11312342 (+)
XLOC_001959 BX640403.1 non-coding downstream 1202904 11498693 ~ 11498809 (+)
XLOC_001960 NA non-coding downstream 1217597 11513386 ~ 11518739 (+)
XLOC_001961 NA non-coding downstream 1356805 11652594 ~ 11665963 (+)

Expression


Co-expression Network