XLOC_001950 (ptgdsa)


Basic Information

Item Value
gene id XLOC_001950
gene name ptgdsa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10788811 ~ 10796936 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003818
GGTCTCTACAACGTAACTATGAAGGTCACCATCTTTTTGCTGATGATTCTGAAAGAAGTCCATGCCAATGTCCAACCGCAGAAAAACTTTGATCTTCAGAGGTTTGCAGGGAGGTGGTATCGGATCGGTCTGGCCTACGATTCTCCAGGTTTTGTGCCACACAGAAGCAAAGTCACCATCTCTATGGGCACAGTGGAGCCACAGGACAACGGGAACGTCAACATGACCATGTGGAGTTTAACTTCGTCTGGTTGTAAGCAAAAGATCTACATTTATGAGAAGACGTCTGTGTCCGGCGTATTTAACTACTACAGCACTCGTCATAGAAGGATGAAAGATGTTACTGTGGTGGAGACAAACTACAGTGAATATGCCATGGTCGTCAAACACAAGAAGATGAACAAGGAATACACACAAGTGTCCCTTTATGGTCGTGCTAAGAAGCTGAAGGCTGATTTGATGGAGAAGTTCAGAGCGTATGCAACAGCTCTTGGATTCTCCAAAGAGTCCATACTGACTCCACCAACTGCCAgaAACTGTCCTCCTAAAGAAGCAAGCCAGAGTTTCATTCAAGTAAAAGCCGGTTATTAATCACATGGTTTTTATCGACCATccttttttttaacttgttttgtcTTTATTCTTTATCTCCTGAAAAGCATGAGAAATACAAGTTCATTTGTAAATATGTGCAAAAGTTAATGTGCAGTACATTGATCGTTTTTGAAAGCAGACTCTGggctttttcagaaaaaaatggcaACTGATTTTTAATTGATTGTACCTGAAAAATAATCCTCATTCTGTGTGCTTTTTTGTGTCATATGTTCAATAACTGTagataaaaaatactttaatgtaTGGCATTTGTTACAGAActgcatttatttgtgtattaaaaaatgtcacttatcaaaaaatgaaattttttagttt
>TCONS_00003819
GGTCTCTACAACGTAACTATGAAGGTCACCATCTTTTTGCTGATGATTCTGAAAGAAGTCCATGCCAATGTCCAACCGCAGAAAAACTTTGATCTTCAGAGGTTTGCAGGGAGGTGGTATCGGATCGGTCTGGCCTACGATTCTCCAGGTTTTGTGCCACACAGAAGCAAAGTCACCATCTCTATGGGCACAGTGGAGCCACAGGACAACGGGAACGTCAACATGACCATGTGGAGTTTAACTTCGTCTGGTTGTAAGCAAAAGATCTACATTTATGAGAAGACGTCTGTGTCCGGCGTATTTAACTACTACAGCACTCGTCATAGAAGGATGAAAGATGTTACTGTGGTGGAGACAAACTACAGTGAATATGCCATGGTCGTCAAACACAAGAAGATGAACAAGGAATACACACAAGTGTCCCTTTATGGTCGTGCTAAGAAGCTGAAGGCTGATTTGATGGAGAAGTTCAGAGCGTATGCAACAGCTCTTGGATTCTCCAAAGAGTCCATACTGACTCCACCAACTGCCAgaAACTGTCCTCCTAAAGAAGCAAGCCAGAGTTTCATTCAAAAATAAGCACCATCCGGCtcattaaaatactatagtagtaatttatagtatttTACTTTTTGAACTATAGTGAAGTCCTTTTAGAAATAATGTGTTAGGTACTTCTGTATTTGCTTTGGTAATACAACTATAATACAAACCAATAAACCTATaggtttcat

Function

symbol description
ptgdsa Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. Is expressed in yolk syncytial layer. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to several human genes including PTGDS (prostaglandin D2 synthase).

GO:

id name namespace
GO:0036094 small molecule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-118 Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. Is expressed in yolk syncytial layer. Human ortholog(s) of this gene implicated in carotid artery disease. Orthologous to several human genes including PTGDS (prostaglandin D2 synthase).

Ensembl:

ensembl_id ENSDARG00000069439

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003818 False 936 mRNA 0.39 6 10788811 10796176
TCONS_00003819 True 734 mRNA 0.41 7 10788811 10796936

Neighbor

gene id symbol gene type direction distance location
XLOC_001949 slc27a4 coding upstream 6001 10738880 ~ 10782810 (+)
XLOC_001948 swi5 coding upstream 51561 10728870 ~ 10737250 (+)
XLOC_001947 fam163ba coding upstream 88042 10636237 ~ 10700769 (+)
XLOC_001946 sardh coding upstream 223843 10386435 ~ 10564968 (+)
XLOC_001945 cercam coding upstream 408680 10351685 ~ 10380131 (+)
XLOC_001951 ambp coding downstream 4628 10801564 ~ 10824286 (+)
XLOC_001952 cdc37l1 coding downstream 175859 10972795 ~ 10998499 (+)
XLOC_001953 ugcg coding downstream 241256 11038192 ~ 11094127 (+)
XLOC_001954 CR931761.1 coding downstream 318918 11115854 ~ 11115970 (+)
XLOC_001955 NA coding downstream 463218 11260154 ~ 11312342 (+)
XLOC_001943 NA non-coding upstream 493022 10288148 ~ 10295789 (+)
XLOC_001941 AL935269.1 non-coding upstream 593209 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 non-coding upstream 875634 9913063 ~ 9913177 (+)
XLOC_001939 NA non-coding upstream 893268 9890691 ~ 9895543 (+)
XLOC_001938 NA non-coding upstream 953365 9823197 ~ 9835446 (+)
XLOC_001959 BX640403.1 non-coding downstream 701757 11498693 ~ 11498809 (+)
XLOC_001960 NA non-coding downstream 716450 11513386 ~ 11518739 (+)
XLOC_001961 NA non-coding downstream 855658 11652594 ~ 11665963 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_05199154_05201984 PTGDSA coding CI01000304 null 5198975 ~ 5203006 (-)