XLOC_001952 (cdc37l1)


Basic Information

Item Value
gene id XLOC_001952
gene name cdc37l1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 10972795 ~ 10998499 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003826
agagAGACACCGCCACTGGTGCTGTAGCTTGAAAATAACTCTCTTCGCTCGCTAACACGCTACCGATTAGTATCTGTTTTCCCGGCTATACGCCTATAAACGCAGCAGAACAGGTCCCGGAGCTCCAGTACTGAACTCCAGCAGCGGGATGGAGTGGTTTGGAGGCGGCATGTGCCAGCCTGAACAGGACCGAAAGGAAAATATGCCCTGCACACACCCACACGAGGCAAGTGCGGAGAGCATGGCGTCTCTGTGTCAGCGGCAGCAGCACTGTGTGAAGGCCTCCATCGCATCAGAGTGGCAGCTGGCAGAAGCGCAGGATCAGCTCTGCGGTCTGGAGCTCCACAGCTCCGAGTCTGTGGAGCAGGAGAGAGCCCGAGCACTGGCCTCCTCCACTGAACTCTCGCACACTGAACACCAGTGGAGGCTCAAAGAGAGGATGCTGGGCACGCTGTGTCCTGAAGCCAACCGGGATGTGTTTGACAAGagTATCATAAACATTACACAGTCTTGGCCAAATGAATCTGATCCAGATAAAAGCTTAAACTTCGTCCAGCGCAATGAAGAGCTCCTGAAACATTTTGGTATGCTGGGAAGGTGGGATGACAGTCAGCGCTTTCTAGCAGAATATCATCACCTCATCTGTGAAGAAACAGCCAATTACCTGATCCTGTGGTGCTTCCGGCTACAGGCAGAGAAGAAAGAGGCCTTAATGGAGCAGGTTGCTCATCAGGCTGTGGTCATGCAGTTTATTCTAGAAATGGCTCGTAACACTCAGCAGGACCCTCGAGGCTGTTTCCGTCACTTCTTTCAGAAAGCCAAAGCCGGACAGGAGGGCTATTTGGACGTGTTTCACACAGAACTCCAAGCCTTTAAGGACAGAGTTAAAGAGTACACTATGAAATCAACAGGAGAAACGCCAAAGGATACAGTTCACCAAAATACACCGCCAGCCTGTTGTCTCGACCCCAAGGAGGTGTTTGAGTCTTTGCCACAGGAGCTGAAAACGTGCATCCAGATGCAAGACATGCAGATTCTTCAGAATGTGCTGAGCAGCATGAACCCACAGGTGGCAGAATATCATGTGAAGCGTTGCTTGGAGGCAGGACTTTGGACAAATATACCACGAACATCCAAAGACGAGAGTTCAGAAGTGGACGAATGGAAAATGATGGAAACCTAACAGTGAAAAAACACTCAAGACTTTCAATCCATCATCTAACTTTAATAGGAAAGAGGCTTTGAGTCAAGGGACAAGAAGAACAAGGGCTGTGCTCAAAGACTTGTGTTTGGTATCCGTGCCTGATCGTGTGCTGcactttatatttgtttaaaagagAAAGTATTTTAAGGAAACTGTACTTATATTTTTGTgcatattttgttacattttggtTCGGTTGCTGATTGGTTTTATGCAGTTCGAAAGAAAACTAGGAAAGTGGTACGAGTAGaccttattgttttgtttttttcaagtaGGTTTTAACCAGTGACATTTAAGAGGACGTTTCTTTTTGGTTTGAATGTTTCGTATCTACACTTCTGGATTGTAATATTCTAGGTCCACCGAACATTCAACTTTAGCTGCTATCTGGGAATTGTTTCATGTGTCATCTGTGTATGGACGCAGCAGATAACAGGCTTTCCTGCTGATAGAGAAACCACACAAAGGCAAGGCAGGACCACCCACTTTGCTATCTGTTTGCTACTAGTACAAACTCGGTTTGCAATGAGAATGGAAATAGCATTTGCCATGAAAATCAAACAATTTAAAGTGATGTGCATTCACTTCTTCGGAATAGGTTGTTATGTTTAAAGTCATAAGTGACAAATGCTGAATAGTTAAGAAAAATTACAAATGAAAAGtatattctgtcattatttaaaaaaaaaaagaacacttttttttttgaaccccattgactttcaatataaaaccaacaccaggaactatccttttaaatatctATTTTAATCTTTCTGCTGATTAAATGAAGTCAAACATGTTTAGAACAACAGGAGGATATATGTAATATCTATTTTGCTCTTTCCATACGGATTTAGAACAACACAAGAATGTGGGAATAATGTCAGAACTATCATGTTTGAATAACTTATCCCTTGCCTAGTGAATGGAGTATGAAAACGACATATTTTGGACCTCATTGAATTTTgttaaattatcaaaaaaatatttaatagtcAATTTATTTAGCAATGTTCAAAGAAAATAAAGTAATACAATGTTAGAACAACACAACAATGTGGGAATAATGTCAGAATTATCAtgtttggttgaactatcctCTCATTCAATAGGGACCAAAAACAACATCTTTTGGGCCCCATTGAGTTtcattcaattttaaaataaaaaaaagattaaa
>TCONS_00003827
CTGGTGCTGTAGCTTGAAAATAACTCTCTTCGCTCGCTAACACGCTACCGATTAGTATCTGTTTTCCCGGCTATACGCCTATAAACGCAGCAGAACAGGTCCCGGAGCTCCAGTACTGAACTCCAGCAGCGGGATGGAGTGGTTTGGAGGCGGCATGTGCCAGCCTGAACAGGACCGAAAGGAAAATATGCCCTGCACACACCCACACGAGGCAAGTGCGGAGAGCATGGCGTCTCTGTGTCAGCGGCAGCAGCACTGTGTGAAGGCCTCCATCGCATCAGAGTGGCAGCTGGCAGAAGCGCAGGATCAGCTCTGCGGTCTGGAGCTCCACAGCTCCGAGCCTTAATGGAGCAGGTTGCTCATCAGGCTGTGGTCATGCAGTTTATTCTAGAAATGGCTCGTAACACTCAGCAGGACCCTCGAGGCTGTTTCCGTCACTTCTTTCAGAAAGCCAAAGCCGGACAGGAGGGCTATTTGGACGTGTTTCACACAGAACTCCAAGCCTTTAAGGACAGAGTTAAAGAGTACACTATGAAATCAACAGGAGAAACGCCAAAGGATACAGTTCACCAAAATACACCGCCAGCCTGTTGTCTCGACCCCAAGGAGGTGTTTGAGTCTTTGCCACAGG
>TCONS_00003828
CCTCCTCCACTGAACTCTCGCACACTGAACACCAGTGGAGGCTCAAAGAGAGGATGCTGGGCACGCTGTGTCCTGAAGCCAACCGGGATGTGTTTGACAAGagTATCATAAACATTACACAGTCTTGGCCAAATGAATCTGATCCAGATAAAAGCTTAAACTTCGTCCAGCGCAATGAAGAGCTCCTGAAACATTTTGGTATGCTGGGAAGGTGGGATGACAGTCAGCGCTTTCTAGCAGAATATCATCACCTCATCTGTGAAGAAACAGCCAATTACCTGATCCTGTGGTGCTTCCGGCTACAGGCAGAGAAGGGCCGGTTCATTCAAAATGGAAActtctgtcatcctttacttacccttcacttcttccaaacctgtttgagtttctttcttctttcttcacaaatgaagatatattgAAaagaaagaaattcataaatgtttacAACTACTTGAGTGCTAGTAGATGAAAGAGGCCTTAATGGAGCAGGTTGCTCATCAGGCTGTGGTCATGCAGTTTATTCTAGAAATGGCTCGTAACACTCAGCAGGACCCTCGAGGCTGTTTCCGTCACTTCTTTCAGAAAGCCAAAGGCCGGACAGGAGGGCTATTTGGACGTGTTTCACACAGAACTCCAAGCCTTTAAGGACAGAGTTAAAGAGTACACTATGAAATCAACAGGAGAAACGCCAAAGGATACAGTTCACCAAAATACACCGCCAGCCTGTTGTCTCGACCCCAAGGAGGTGTTTGAGTCTTTGCCACAGG

Function

symbol description
cdc37l1 Predicted to enable chaperone binding activity; heat shock protein binding activity; and unfolded protein binding activity. Predicted to be involved in protein folding and protein stabilization. Predicted to be active in cytoplasm. Orthologous to human CDC37L1 (cell division cycle 37 like 1).

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0050821 protein stabilization biological_process
GO:0005737 cytoplasm cellular_component
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:0051087 chaperone binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8865 Predicted to enable chaperone binding activity; heat shock protein binding activity; and unfolded protein binding activity. Predicted to be involved in protein folding and protein stabilization. Predicted to be active in cytoplasm. Orthologous to human CDC37L1 (cell division cycle 37 like 1).

Ensembl:

ensembl_id ENSDARG00000044265

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003826 False 2390 mRNA 0.42 8 10972795 10998499
TCONS_00003827 False 631 processed_transcript 0.53 4 10972810 10987302
TCONS_00003828 True 770 lncRNA 0.45 7 10980233 10987302
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Neighbor

gene id symbol gene type direction distance location
XLOC_001951 ambp coding upstream 148509 10801564 ~ 10824286 (+)
XLOC_001950 ptgdsa coding upstream 175859 10788811 ~ 10796936 (+)
XLOC_001949 slc27a4 coding upstream 189985 10738880 ~ 10782810 (+)
XLOC_001948 swi5 coding upstream 235545 10728870 ~ 10737250 (+)
XLOC_001947 fam163ba coding upstream 272026 10636237 ~ 10700769 (+)
XLOC_001953 ugcg coding downstream 39693 11038192 ~ 11094127 (+)
XLOC_001954 CR931761.1 coding downstream 117355 11115854 ~ 11115970 (+)
XLOC_001955 NA coding downstream 261655 11260154 ~ 11312342 (+)
XLOC_001956 si:ch211-126i22.5 coding downstream 311315 11309814 ~ 11310769 (+)
XLOC_001957 cops4 coding downstream 357342 11355841 ~ 11372541 (+)
XLOC_001943 NA non-coding upstream 677006 10288148 ~ 10295789 (+)
XLOC_001941 AL935269.1 non-coding upstream 777193 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 non-coding upstream 1059618 9913063 ~ 9913177 (+)
XLOC_001939 NA non-coding upstream 1077252 9890691 ~ 9895543 (+)
XLOC_001938 NA non-coding upstream 1137349 9823197 ~ 9835446 (+)
XLOC_001959 BX640403.1 non-coding downstream 500194 11498693 ~ 11498809 (+)
XLOC_001960 NA non-coding downstream 514887 11513386 ~ 11518739 (+)
XLOC_001961 NA non-coding downstream 654095 11652594 ~ 11665963 (+)

Expression

Expression of XLOC_001952(cdc37l1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_001952(cdc37l1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network