XLOC_001953 (ugcg)


Basic Information

Item Value
gene id XLOC_001953
gene name ugcg
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11038192 ~ 11094127 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003829
CCTCTCTCAGtcatctgaatgtgtgtgtgtgtgtgtgtactagagagagagagagagaaagagagagagagattagcTCTTCTTCCTCCAGCATTAGGGCCGAACAGTGAGGTGTCAGCGAGCGCATCCGGACACAGGACAGCAGAAGCAGCTATGGCCCTGCTCGATCTCGCCCTGCAAGGCTTCGCCATCTTCGGCTTCCTCTTATTCCTCGTCCTCTGGCTCATGCACCTCGTGTCCATCATCTACGTCCGTCTGCATCTCAACAAGAAGACCCCAGACAAGGTGCCATACAGCAAACTAGCTGGTGTTTCGCTGCTGAAGCCACTCAAGGGTGTGGACCccaatctaataaacaatctcgAGACATTTTTTGAACTGGACTATCCCAAGTATGAAATCCTGCTCTGTGTTCAAGACCACGACGATCCAGCCATCGATGTATGTAAAAAGCTGCTGGGCAAATATCCCAATGTCGATGCCAGGTTATTTATAGGTGGTAAGAAAGTTGGCATCAacccaaaaataaataacctCATGCCAGCTTATGAAGGGGCAAGGTACGAGCTCGTCTGGATCTGTGACAGTGGCATTCGAGTGAAGCCAGACACTCTTACTGATATGGCTAATCAGATGACGGAGAAGGTGGGACTGGTTCATGGTCTTCCATACGTGGCAGACAGACAAGGATTTGCCGCTACATTGGAGCAGGTTTATTTTGGAACGTCACATCCTCGTTCCTACATCTCCGCCAATGTAACAGGAATCAAGTGCGTCACGGGGATGTCGTGTCTCATGAGGAAGGACATCCTGGACCAAGCCGGCGGCCTGATTGCTTTTGCTCAGTACATCGCTGAAGATTACTTCATGGCCAAGGCCATCGCAGACAGAGGATGGAAATTTTCCATGGCGACACAGGTAGCCATGCAGAATTCAGGCTCATACTCCATCGCACAATTCCAGTCTCGCATGATCAGATGGGCCAAGCTGAGAATCAACATGCTGCCAGGCACCATCATCGAGCCCATCTCGGAGTGCTTTGTGGCGAGTCTTATCATCGGCTGGGCCGCTCATCATGTGTTCCGCTGGGACATCATGGTGTTTTtcctgtgccactgcctcgcctggtTCATTTCAGATTATATCCAGCTCAGAGGAGTACAGGGCGGCCCTCCATCCTTCTCCAAGCTGGACTACGCAGTGGCCTGGTTCATCAGGGAGTCCATGACTATTCAGATTTTCCTGTCTGCTCTTTGGGATCCCACCATTAGCTGGAGGGCCGGACGTTACCGCTTGCGTTGCGGAGGTACAGCAGAGGAAATCCTGGATGTTTAAACGGCACCGTGTGCCAAGGACTATGCACTGCAAGACCACAAGGTCGCAGATGGACAAATGAACTGCaaacatttattgtttgttttgggttttaTTCCAACTTATAGTTTTTAACCTGTGACTTTAGCTCAATAGATTATTTATGTCCTTGgtgcttttttttctatttgttttccTGTGAGGTCTCTTGATGATTTGAGACCTTGTTCTAGATGAGCCAAAATTAATGAAGGGGCAAAGAAGAGAGAACTTTTGAGGATGAGGCGGCACTTCAGTGGTCATCAAAACCCTGATGAAAAATatcaacttttttcttttctttttttcttttttttttataggtcCTTGTAACATGTGTAGTGGTGATTGAATATGTGTCCAACACATCCATTTTATCATACGTTTGGATGAATGGTACAGTTTTTAAATGATATAGTGGGGTGTAGAAGTCACTTGCGTATGAATGGATCACATGCCTATCACAGTGTTGCTCTGAACATACAGCACTCTTgccatattttatacatttttggacCTCTGAATGCTCAAAAACGGATCCCCTCAGGTCCATTTTATGTTTACCGGACAGCAATATCTTCTGAGGTGATGCATAGGGAATTTTGGCAGAGCTTTGTATATGGATACTGTGGATCTATCCAGAAAACGACGCAACACTTGTATATGCTTGCACAGTTTTTGCAGCCACCCTGCAGTATTCAAGGCCTAGGTTAAACCTCGTTGTGATACCTGCAGATTTAATCTCATATCTTATGAAATGTAGTGCCATTTGAGGAGTGAACGTTTTTATTGTTATAGTTTTGCTTTTCTCCAAGGCCTTCGTCATCTCCcctgcttcattcattcattcattcattctctgcaCTGGTTGCTTTTGTACCAGGTTCAGGGTCTGCTTAAACATTTCCTCCATGCTGCTGCTTGTTTAAGAAGCTCTGTCAGTATTTTCCTGCAAAAGTTTGACTGGATATATATAAATGCTTACCTCCAAATTGTCCAAACATTTCATCCGACACCATTTCAGAACCAATTTCTGCTTGTCATGAAGAGTTTGTGAAGTTTTCTTTATATACACTCAGTTTTTTTGAGTTAAAGCACAAAATGATTTTAGAAAGTGCTATGTTTACGCTCTGAAACATTTCAGACCTCACAGTCACACCATGTGCTTTTTGGCTTCTCAATTTCCCCATTTACATAATCCAACTTTGCCATCAGTCAAACAGTATTCACGAAACAATTGACATTCTTCTCTGTattccttttttttgttgttgatgttcGAGGAACTGCTAGTTTCTGTTTTCTACTGCCAGCACTTGTCGTTAAACCGCTTCTTCTGCATTTTCCTCATTTTTTTGAGTCTCTCTTGCCCGCCTTCTTGAGCTGATCATTAAGTACCCGTGTCAGCACTGGCAGTATTGTTTTTACACAATTCACTTGGGTAGTTCAACTCTtattcaaaaacaaacacaagtgaAGTACAGTACGTATGTCTTTATAGTCCCAACAGCTGCCATTTATGAAGTACACTGTTTTAACCCAATGCCAAACCCTccattgttaatgtttttttggtGTTGATTTCTTCTAATTTGAACACATCTGACTTTTGGGCTCACTATTGGAAATAAACTTGTGTTTTGTGCATGA

Function

symbol description
ugcg Enables ceramide glucosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in notochord; primary neurons; trigeminal placode; and yolk syncytial layer. Orthologous to human UGCG (UDP-glucose ceramide glucosyltransferase).

GO:

id name namespace
GO:0006679 glucosylceramide biosynthetic process biological_process
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008120 ceramide glucosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00600 Sphingolipid metabolism
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-030131-9885 Enables ceramide glucosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in notochord; primary neurons; trigeminal placode; and yolk syncytial layer. Orthologous to human UGCG (UDP-glucose ceramide glucosyltransferase).

Ensembl:

ensembl_id ENSDARG00000058221

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003829 True 3003 mRNA 0.44 9 11038192 11094127
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_001952 cdc37l1 coding upstream 39693 10972795 ~ 10998499 (+)
XLOC_001951 ambp coding upstream 213906 10801564 ~ 10824286 (+)
XLOC_001950 ptgdsa coding upstream 241256 10788811 ~ 10796936 (+)
XLOC_001949 slc27a4 coding upstream 255382 10738880 ~ 10782810 (+)
XLOC_001948 swi5 coding upstream 300942 10728870 ~ 10737250 (+)
XLOC_001954 CR931761.1 coding downstream 21727 11115854 ~ 11115970 (+)
XLOC_001955 NA coding downstream 166027 11260154 ~ 11312342 (+)
XLOC_001956 si:ch211-126i22.5 coding downstream 215687 11309814 ~ 11310769 (+)
XLOC_001957 cops4 coding downstream 261714 11355841 ~ 11372541 (+)
XLOC_001958 cwc27 coding downstream 303984 11398111 ~ 11501424 (+)
XLOC_001943 NA non-coding upstream 742403 10288148 ~ 10295789 (+)
XLOC_001941 AL935269.1 non-coding upstream 842590 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 non-coding upstream 1125015 9913063 ~ 9913177 (+)
XLOC_001939 NA non-coding upstream 1142649 9890691 ~ 9895543 (+)
XLOC_001938 NA non-coding upstream 1202746 9823197 ~ 9835446 (+)
XLOC_001959 BX640403.1 non-coding downstream 404566 11498693 ~ 11498809 (+)
XLOC_001960 NA non-coding downstream 419259 11513386 ~ 11518739 (+)
XLOC_001961 NA non-coding downstream 558467 11652594 ~ 11665963 (+)

Expression

Expression of XLOC_001953(ugcg) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Expression of XLOC_001953(ugcg) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_05039292_05067803 UGCG coding CI01000304 null 5038986 ~ 5067814 (-)