XLOC_001957 (cops4)


Basic Information

Item Value
gene id XLOC_001957
gene name cops4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11355841 ~ 11372541 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003838
cccacATAGACTTTACCGCCCTCTAGTGTGTTGTTCAGTTGTCGTCGGTTCTCTGTGTTGTGTGGCGCCCTCTGCTGGCCCGCAGGTTTCGCTGTTTAAGTGCGGAGGAAAATGGCGTCCGGCGTGAGGCAGGAGCTCGCACAGCTGATGAACTCTAGTGGCTCTCATAAAGATCTAGCTGGGAAATATCGTCAAATATTAGAAAAGGCTCTACAGTTTACTGATGCAGAACAACTTGAAGCACTGAAAGCATTTGTTGAAGCGATGGTCAATGAGAATGTCAGCCTGGTCATATCCAGACAGCTTCTGACAGACTTCTGCGCGCACCTTCCAAATCTTCCAGACGACATAGCGAAAGTTGTGTGTCACTTCACCCTGGAGAAGATCCAGCCCAGAGTCATCTCTTTTGAAGAACAGGTGGCATCCATCAGACAGCATTTAGCCACAATCTATGAGAAGCAGGAGGACTGGAGGAACGCTGCACAGGTTCTTGTGGGGATCCCACTGGAGACGGGTCAAAAACAGTATAATGTGGACTACAAATTAGACACTTACCTGAAAATTGCTCGTCTGTATTTGGAGGATGACGACCCGGTTCAGGCCGAGGCCTACATCAACCGAGCGTCTTTATTGCAGAATGAATCCACCAATGAACAGTTGCAGATTCACTACAAGGTCTGCTACGCCAGAGTTCTGGATTATCGAAGGAAATTCATCGAAGCAGCTCAACGCTACAATGAGCTCTCATACAAATCCATCGTGCATGAAACTGAGCGTCTAGAGGCTCTAAAACATGCACTTCACTGCACTATACTGGCCTCTGCAGGTCAGCAGCGCTCTCGTATGTTGGCTACTCTCTTCAAGGATGAACGATGTCAGCAGCTCGCCGCCTACGGCATCCTAGAGAAAATGTACCTGGATCGAATCATCCGAGGAAACCAACTGCAAGAGTTTGCTGCCATGCTGATGCCACATCAGAAAGCCACCACAGCCGATGGTAGTTCAAGTATTCTAGACCGAGCCGTTATTGAGCACAACCTGCTGTCTGCAAGCAAACTGTACAATAATATCACGTTTGAAGAGCTTGGAGCACTTTTGGAGATTCCTCCTGCAAAGGCAGAAAAGATAGCATCACAAATGATCACCGAGGGCCGCATGAACGGATTCATTGACCAGATTGATGGCATTGTGCATTTTGAAACACGAGAGCCGTTGCCCACCTGGGACAAGCAGATTCAGTCGCTGTGCTTCCAGGTCAACAACCTCTTAGAGAAGATCAGTCAGACCGCACCAGAGTGGACAGCACAGGCCATCGAGGCCCAGATGTCCCAATAAACCTTATTCATGCTCTTTTTGTCTACAAACTTCAATTCTTTGCTTTCTCTGCTCTCATTGGTCAAAACTGAAACGACTCTGAATTGAATTTAAGCCAGCACATATTGATGTTCTGTTGAAGGGATAGTTTAgccaaaatgtaaattttgtcatcatttattcattctccaaacctcttagagtttttgtcttgtgttgaacacaaaggaagatattttgaacaatgttgggaaaaaaaacaggaaCTTGCAtagctgttttgtttttactataaATGTGAATGAttgctttttccaacattcttcagaatatgttGTTTTGTGAGAGGGAAAAAGagcaaaaaagcataaatagaaCTACTTGaatgtgaataaatgatgagaaAATGTTCGCTTTTGGATTAATTATTTCTTTTaagttttacttttttgtttgtgaatttaatattttcatagtTATGGTCTTTGAGTATTAGATGCTGAATAAAcatctggaaaaaagtcttagtttctaaattttgttttattatattttgggtTTTACAACCCTGTGTCTCATCCATCACCCTTTgcatcattcattcgtttttaaAGTTAGACATCAACCTCCTTAGTATTACACTATTTATTATCAACATgaacattatattttaatttaaaccaaccaaaaatataaagttaggccataaatatttggacatcaacaTAATTCTAATATTTTTAACTCTATGCACCAGCACAATGGAATTGAAATGAAACAAAGAGGATTAaagtgctttaactgcagactgtcagctttaatttgagggtatttatatCCAAATCAGGAGAATGGTGTAGGAATAACAACAGTTTGCAAAtctgcctcccacttgttaagaggccaaaagtaattggacaactGGCTTATAAGCAGAAAATCAGCAGATAAAAGgttcagagttcatttcaagtttgctatttgcatttggagtTTGTTACTGTTAATTCTCAGGATGAGATCCAAACAGCTGTCACTAttagtcaagcaagccatcattaggctgaaaaaacaaaacaaacccatcagagaaATAGCAAAAACATCAGGCGTGGCCAAAACAACTatttggaacattcttaaaaaggaAGAACGCACCAGTGAGCTTAGCAATACCAAAAGACCTAGAACACCatggaaacaactgtggtggatgacTAAAGAATTCTTTCCCTagtgaagaaaacacccttcacaagATCAAGAACTCTCTCTaggaggtaggtgtatgtgtcagagtcaacaatcaagagaagactacacgagtgaatacagagggttcaccacaagatgtaaaccgcTGAGCCTCAAAACCAGGAAGGCCAATTTATACTGTAGTTCTAAAAAAGCCTCCACATGGCTGGAACAACATCCTTTGGACAGTTGAAACAAGATCAGCTTGTACCAGAGTAATGGGAAGTAaagagtatggagaaggaaaggaactgctcatgatcctaagcagtaaAGCATGATGGTAGTAGTGGCATGTAGTGGCCATGTATGGCTTTTaatggaactggttctcttgtgtttattgatgatgtgactgctgacaaaagcagcagtatgaattctgaagtgtttcagggaatattttctgctcatattaaaGGGTATCTATAATGAAAAATCAACTTTTCAAggtgtttggacagacgtgtgtaggtaCAGTgaatagaccgtcatattggggtaatgtaaacacacagtccttttttttacaatttaacaacataaaaatggtggaccaattggatcggttttcagagcgaccgcaacttgacgtaggagtgcagtgcccccacccaccaatattgattgacaggcgcatcaccatatccttagtttgttgtttcacgtccgccattttccgCATGTAAGTCAAAGCGGCATCTCTAAAGGAACATTCTTgcttatttttagatgtaaggctcattgggctcaacacaagatcaatattctccacaatATCACTCTAAtctgaattattgtttgtacctttaggtaggtttgcaaacgtgtacttttcattgcgtctaccttcaacttcagccatttgcatttcGCGCAATTACAGAAGCTTCCTGTCATCTTAACTAGatgcagctggaaaagtgcaatCGCGTTGCCTCGTGCACGTCTCtccaatggaaataaaataatgaacttaCCTGCAGGTCGCATACCAGAAGCGCCGAGCGTCGCGCcatgcagcaccatgcattttagaattctaaacgaAGGTTTCTAAcagggtacacacaacggcgCTTCAAGTCGTCGGCGGTTCGCCGCGGACAGCCATCGACTTCAAGCGCTGTTGTGAGTACCCTGATCGAAACCTATGTTCTAAAATGTGTGACGCGACTTCATGTTTCTgcgtctcggtgtacaagcttggCACTTGAAACTAGTACActgttggctgtaaaactatacaaagacacaaatgattttgtactctctgcttggtctgtgtccgagtcgtacatgtacggctgaatgctgatcctctcactcatgtAGCTTAGCTTTTCTTtgcctgcctgtctgttgcaaacacagagcgtggaAGCTCTTGTCTCTGCCCCTTTGTTACGTTGGACGGGAAGCTAAAACTAATTTTCATgcgaagcaacacacccctaaaacagcgagctttGTACGCGCCCCCCAAATGACACAAATTTTAACACAttgtaataaaaacatctgaactgtgtgttgtactgaacctaaactggcacactcagaagaaccataatattaatagagttattttaaggtaaagaagtgaaatgttatgcaatggccaagtcaatcacctgatctaAATCTGATTGAGCTTACAGTTGAGGACAGTTGCAGAGGTCTGGCAGAGCaccaacaggaaaaaaaaaaaaaactcagcatccAGTGATGTCTATGCATTCCAGACTTCAAGCTGTAATtaactgcaaaggatttgcaaccaagtattatgATTATCATAGTATTATGACTATGATTATGATTATCAAATTATACCAATTACTTTTGGCCCCTTAACAAGTTGgatgcacatatgcaaactgttgtaattcctacactgtTCACCTGATTTAGATGTAAATGCCCTGAACTTAAAGCTGACAATCTACAGTTatagcacatcttgtttgttttatttcaaaaatgttagaattgtgttgtgtccaaatatttatgaacctaattgtatatataaaaataaagttttgtgaATCTATCTGTGGTCTCATAATGGatttatattaacaaatataCAAACAACATAACAAGCATATTTTTAGAGTGACTGAtggattttcatttgttttgttcccTAAATTACTGGTAACCTCAAAAAATGCAAAGGCTTTCATAATAATGTTATAGTTCATATACTTCCTACTGTGATGTTTTCAGGATTTAACACAAAGGCTGTAAGGACATTGTGAGCTTTCAACAGCTCTGATAAATTAAGTGATATGCTGCCTGTGTTCAATTTTATTGAGGGGAGTTAATGATATGTCTGAATCATAAAATGGCGCCTATGGCTGGAAGGGTTTAATTTTTGATTTACGGAAATTGTTGTCATTGAAATCAATGAGATCATGAATGTTGCAAGATGGAAttggaaatgtaatttaaaacatCAGAATTGAACACTATGCAGTGgcggaaaaaagtattgaacatctCACCATTTTTCtgagaaaacatatttctaatggTGCCGTTGACTTGggattgtattgtttgggtttctaccaaaatctggttcagttCCATGTCAagagctcctttagaaatattattcccaggaaaaacatgacatgttcaatactttaaTTCCCTACTGTATATAATGGTTTTCCACATAGAATCAATGAGCTTATGCTAAATCatctcttcaaaaaaaaaaaaaaaagcacatttttaaatttctgttttattttttgcattggaaGACTTTATAGCTAGTAACTTTACTACATTTACAAATGATAAAAAAGCATATTTACAAAGtaatgttgttataaataaatgacTACCAAGAACCTGACATTCATTGACATGATGCAAATTAGTAATAAATTAATTGCAAGAACACAGCAACCAACATGTTAATTAGCTCTCTACATTATTGCACCTATATCATAAAATACAGCTGGATGTTATGAGAAACATGATGTCTGTTATCAGTCTAATACCAACAGCCTGTACTTTCATACTGAATGAAGCCATAAAGTTTGATTAGCGTATCTATTTGCTTATACCACATCTTAGTCTTTAGATATTAGACACTAGTGTATTGTAGATAGACTGCTTAAAAGCATTTTTCTCTGTTGCCTTTAAAAAGCAGACCAACTCTGTTCACTGCTTTTGAATCTTTGAAAAAAGTTTTCTCAGAACTGTCCTAAGCGCTTCCTAATTTCGATGTCTCTCTTCAACTGGCAGGCTGCACAAGGCATGCAGTTGTAAACGATACAAAAGTCAGTACACATCGAaccctggaaaac
>TCONS_00003839
GTCGGTTCTCTGTGTTGTGTGGCGCCCTCTGCTGGCCCGCAGGTTTCGCTGTTTAAGTGCGGAGGAAAATGGCGTCCGGCGTGAGGCAGGAGCTCGCACAGCTGATGAACTCTAGTGGCTCTCATAAAGATCTAGCTGGGAAATATCGTCAAATATTAGAAAAGGCTCTACAGTTTACTGATGCAGAACAACTTGAAGCACTGAAAGCATTTGTTGAAGCGATGGTCAATGAGAATGTCAGCCTGGTCATATCCAGACAGCTTCTGACAGACTTCTGCGCGCACCTTCCAAATCTTCCAGACGACATAGCGAAAGTTGTGTGTCACTTCACCCTGGAGAAGATCCAGCCCAGAGTCATCTCTTTTGAAGAACAGGTGGCATCCATCAGACAGCATTTAGCCACAATCTATGAGAAGCAGGAGGACTGGAGGAACGCTGCACAGGTTCTTGTGGGGATCCCACTGGAGACGGGTCAAAAACAGTATAATGTGGACTACAAATTAGACACTTACCTGAAAATTGCTCGTCTGTATTTGGAGGATGACGACCCGGTTCAGGCCGAGGCCTACATCAACCGAGCGTCTTTATTGCAGAATGAATCCACCAATGAACAGTTGCAGATTCACTACAAGGTCTGCTACGCCAGAGTTCTGGATTATCGAAGGAAATTCATCGAAGCAGCTCAACGCTACAATGAGCTCTCATACAAATCCATCGTGCATGAAACTGAGCGTCTAGAGGCTCTAAAACATGCACTTCACTGCACTATACTGGCCTCTGCAGGTCAGCAGCGCTCTCGTATGTTGGCTACTCTCTTCAAGGATGAACGATGTCAGCAGCTCGCCGCCTACGGCATCCTAGAGAAAATGTACCTGGATCGAATCATCCGAGGAAACCAACTGCAAGAGTTTGCTGCCATGCTGATGCCACATCAGAAAGCCACCACAGCCGATGGTTCAAGTATTCTAGACCGAGCCGTTATTGAGCACAACCTGCTGTCTGCAAGCAAACTGTACAATAATATCACGTTTGAAGAGCTTGGAGCACTTTTGGAGATTCCTCCTGCAAAGGCAGAAAAGATAGCATCACAAATGATCACCGAGGGCCGCATGAACGGATTCATTGACCAGATTGATGGCATTGTGCATTTTGAAACACGAGAGCCGTTGCCCACCTGGGACAAGCAGATTCAGTCGCTGTGCTTCCAGGTCAACAACCTCTTAGAGAAGATCAGTCAGACCGCACCAGAGTGGACAGCACAGGCCATCGAGGCCCAGATGTCCCAATAAACCTTATTCATGCTCTTTTTGTCTACAAACTTCAATTCTTTGCTTTCTCTGCTCTCATTGGTCAAAACTGAAACGACTCTGAATTGAATTTAAGCCAGCACATATTGATGTTCTGTTGAAGGGATAGTTTAgccaaaatgtaaattttgtcatcatttattcattctccaaacctcttagagtttttgtcttgtgttgaacacaaaggaagatattttgaacaatgttgggaaaaaaaacaggaaCTTGCAtagctgttttgtttttactataaATGTGAATGAttgctttttccaacattcttcagaatatgttGTTTTGTGAGAGGGAAAAAGagcaaaaaagcataaatagaaCTACTTGaatgtgaataaatgatgagaaAATGTTCGCTTTTGGATTAATTATTTCTTTTaagttttacttttttgtttgtgaatttaatattttcatagtTATGGTCTTTGAGTATTAGATGCTGAATAAAcatctggaaaaaa

Function

symbol description
cops4 Predicted to be located in nucleus and synaptic vesicle. Predicted to be part of COP9 signalosome. Predicted to be active in cytosol. Is expressed in liver. Orthologous to human COPS4 (COP9 signalosome subunit 4).

GO:

id name namespace
GO:0008180 COP9 signalosome cellular_component
GO:0005829 cytosol cellular_component
GO:0045202 synapse cellular_component
GO:0005634 nucleus cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0030054 cell junction cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019784 NEDD8-specific protease activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-4317 Predicted to be located in nucleus and synaptic vesicle. Predicted to be part of COP9 signalosome. Predicted to be active in cytosol. Is expressed in liver. Orthologous to human COPS4 (COP9 signalosome subunit 4).

Ensembl:

ensembl_id ENSDARG00000043732

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003838 False 5900 mRNA 0.39 10 11355841 11372541
TCONS_00003839 True 1789 mRNA 0.44 10 11355884 11368476
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Neighbor

gene id symbol gene type direction distance location
XLOC_001955 NA coding upstream 43499 11260154 ~ 11312342 (+)
XLOC_001956 si:ch211-126i22.5 coding upstream 45072 11309814 ~ 11310769 (+)
XLOC_001954 CR931761.1 coding upstream 239871 11115854 ~ 11115970 (+)
XLOC_001953 ugcg coding upstream 261714 11038192 ~ 11094127 (+)
XLOC_001952 cdc37l1 coding upstream 357342 10972795 ~ 10998499 (+)
XLOC_001958 cwc27 coding downstream 25570 11398111 ~ 11501424 (+)
XLOC_001959 BX640403.1 coding downstream 126152 11498693 ~ 11498809 (+)
XLOC_001960 NA coding downstream 140845 11513386 ~ 11518739 (+)
XLOC_001961 NA coding downstream 280053 11652594 ~ 11665963 (+)
XLOC_001962 ppwd1 coding downstream 395250 11767791 ~ 11788565 (+)
XLOC_001943 NA non-coding upstream 1060052 10288148 ~ 10295789 (+)
XLOC_001941 AL935269.1 non-coding upstream 1160239 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 non-coding upstream 1442664 9913063 ~ 9913177 (+)
XLOC_001963 CR925713.2 non-coding downstream 401864 11774405 ~ 11774519 (+)
XLOC_001964 NA non-coding downstream 553532 11926073 ~ 11927986 (+)

Expression

Expression of XLOC_001957(cops4) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Expression of XLOC_001957(cops4) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_04894865_04896532 CSN4, COPS4 coding CI01000304 null 4894865 ~ 4896705 (-)
bowfin (Amia calva) AMCG00010660 cops4,csn4,LOC106562268,LOC107685106 coding CM030129.1 CM030129.1 38447303 ~ 38458936 (+)