XLOC_001958 (cwc27)


Basic Information

Item Value
gene id XLOC_001958
gene name cwc27
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11398111 ~ 11501424 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003840
GAATGAACGAAACTCTGCGGCGGCGTGACATGAAGCGCTTGTAAACAGAACATACTCTGGTACTTTATATCGGCTAGACGTGCTTCTTATGTTTTTGTAACATCTGCGCATATTCTGTACATTCTCTGTCATCAATGAAACCGTGGTGAGGGAAGTATACTCCAATAATACGCACTAAAGATGAGCAACATATATATTCAAGAGCCACCAACTAATGGAAAGGTCTTGCTGAAGACCTCTGCAGGTGACATAGACATAGAGCTCTGGTCTAAGGAAACTCCCAAAGCATGTAGAAACTTTGTTCAGCTGTGTATGGAAGGTTACTATGATGGCACAATCTTCCATCGTATGGTGCCAGAGTTCATAGTTCAAGGAGGAGATCCGACAGGCACTGGAACTGGTGGGGAGTCTATCTACGGCCGGCCTTTTAagGATGAATTTCACTCCAGATTACGATTCAATCGGAGGGGTTTGGTTGCTATGGCAAACGCAGGACCTCATGATAATGGGAGCCAGTTCTTTTTTACTCTTGGACGAGCAGATGAACTCAATAACAAACACACCATTTTTGGAAagGTCACTGGAGATACAGTGTATAACATGCTCAGGTTGGCAGATGTTGCGTGTGATGGTGATGAGCGACCTCTTAACCCACATAAAATTCGATCCACAGAGGTCTTGCATTCTCCTTTTGATGACATCATTCCACGTGAGATTAAAGGCAAAAAAGAGAAGAACAAAGATGAAGCGAAGAAGTCACAGTCTAAAGCAACCAAGAATTTCAGCTTGTTGTCATTTGGAGAGGAGGCCGAGGAGGATGAGGAGATGGTCAATCAAGTCAGCCAGACCATGAAAGGGAAAAGCAAAAGCAGTCATGACCTGCTGAAAGACGATCCCAAGTTAAGCTCAGTTCCAGTTGTTGACAGgaaCCAAGGGCAAGGTGATTTTGAGGATtcagatgatgatgaagatgatgcgGAGGATGACAGTGATCGTGAAGCAGAGAAAGCGAAGGTCAGAGAGAACATCGCAAAGAAGCTGAAGAAAGACAAGACGGATGAGGAGAAGTCCAGTCAAGACTTGGTGAAAAAGACCTCGCGCAGTGATGAATTGCGAAAAGAAGCTCGCCAGCTGAAGAAAGAATTACTTGCAATCAAACAGCGAAAAGAAGACGGTGTGAAGAAAGAAGAGGACGTCAGCGAGGTAGGTGACAGTAAGCAGAACAGTGAGGCGGTGACGGAGTATCTAGAGAGCAGGAAGAAGTACGACGACATGAGGAAGCAGAAATTAAAGAAGGGCTCTGGACGAGAAGCTCAGACACTTGCCCTTCTAGAAAGCTTCAAATCCAAACTATCATCTGCAATATCGGAGACTCCTAGTGCCCCAGAGGAAGATGTGGAGGAACTAGCCGAGGATGACGATAAGGGCTGGATGGCCCACGTTCTGCACTTTGATGAACAAAGCAGAAAGGTAAAAGATGCCAACATGCAGGATGAAGACACGTTCGAGATCTATGATCCACGCAACCCCGTCAACAAGAGGAGACGAGAGGAGAGCAAAAAACTCCTGAAAGACAAGAAGGCCAGGAGGTGAGACTGCAGATACAGTTCCTGCCTGTCTCCAGAAGAATCCAATTGACCTGTGCTTAAATGAGAGATCATACACACAATTCTTACATTAAAGACTCATTTCCATTTGGTATGATACTTAGAGATACTTGTAAAAGTTGCAACCATTTAGTGTTTTTCATAATACAGACAACAATCTTCTTTTACTCTTTGGTGTCATTATCAAAAATGTTCttacactgtaaacaaacaggCTCTCAAATTGTGTGTATTTACAACATAGTAATAAAAGTCCTTATTTCTAAA

Function

symbol description
cwc27 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human CWC27 (CWC27 spliceosome associated cyclophilin).

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0005634 nucleus cellular_component
GO:0071005 U2-type precatalytic spliceosome cellular_component
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1118 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be located in nucleus. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human CWC27 (CWC27 spliceosome associated cyclophilin).

Ensembl:

ensembl_id ENSDARG00000043727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003840 True 1874 mRNA 0.44 14 11398111 11501424

Neighbor

gene id symbol gene type direction distance location
XLOC_001957 cops4 coding upstream 25570 11355841 ~ 11372541 (+)
XLOC_001955 NA coding upstream 85769 11260154 ~ 11312342 (+)
XLOC_001956 si:ch211-126i22.5 coding upstream 87342 11309814 ~ 11310769 (+)
XLOC_001954 CR931761.1 coding upstream 282141 11115854 ~ 11115970 (+)
XLOC_001953 ugcg coding upstream 303984 11038192 ~ 11094127 (+)
XLOC_001960 NA coding downstream 11962 11513386 ~ 11518739 (+)
XLOC_001961 NA coding downstream 151170 11652594 ~ 11665963 (+)
XLOC_001962 ppwd1 coding downstream 266367 11767791 ~ 11788565 (+)
XLOC_001963 CR925713.2 coding downstream 272981 11774405 ~ 11774519 (+)
XLOC_001964 NA coding downstream 424649 11926073 ~ 11927986 (+)
XLOC_001943 NA non-coding upstream 1102322 10288148 ~ 10295789 (+)
XLOC_001941 AL935269.1 non-coding upstream 1202509 10178101 ~ 10195602 (+)
XLOC_001940 BX248503.1 non-coding upstream 1484934 9913063 ~ 9913177 (+)
XLOC_001965 NA non-coding downstream 426665 11928089 ~ 11929132 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_04809176_04857217 CWC27 coding CI01000304 null 4809176 ~ 4857217 (-)