XLOC_001960


Basic Information

Item Value
gene id XLOC_001960
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11513386 ~ 11518739 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005688
tttaacataatttttagCACATTCTTGTTTTCATTATTATACagtgtaagaggctaaattatcatatgcatttgtttataatacaaaacatgctttttcactcaagaaggtccatactgactacaaaggcagatactgataagatcagggcctgttgtgtggactttgggggttttatggtgtggtcacatgttgattggtcagtttgaatgtctcagcattggtggtcacatggtcaagaaagatacaaaataggtggtaaactctgGCTCTGTCTCTTTTTCCTgcctctcttttcctggcctggttctctcctgCTCTGTCTCTTTTTCCTgcctctcttttcctggcctggttctctcctgctctgctcctcttctcctctggagtctatcttctctgactctactgctatcaggcttttgggcctgctctctttgtctctctctccctccctctgtgtctctccttctacctatggtaactttaattttacatttaagctgggtacaatttataccatatgttttatcatttcatattttatcattttatacagtattttgttattaattcagttgtaaccatagagaattattgtcattaaatcatttcattttcaagtatttgtgaattacttttgatttaacatcaacacttaattgttccatatagcaatacaatacaatcacataatatcaacgctctcccacatttatagctattaatactgcccttatttccgtttttggtataagattgcagaagaatggtttgactagaaatgtacagttttttaccatcatgctgatcactttttagtcactcggcagaactacagttcgaaccgctgtggtttaaaGACCGTTCTTACATACAGTGATGCTTAAATTCAGTGTAATGGAGGACAATTTGGTGTTACAGATAATTAGCACTGAATTAGCATTACATTAGCTCTTAatctctcccccccccccccatgtgcACATTTTGTATATTTCTCCTACTGCTTTAGAAGTTTGTTCCATTTGACTGTAAGTGACCTGCAAAGTGGATATCACAGGTTATTCTGAGAGGATTTAAGTCTGAATGAACTGTGTTCAATCAAAGGGCACGAGAACATATGACTTTTATACAAATCTCATTATTACGGTTAAATAAACCTTCACAAATCTGTAATATGGTTCAtctaaacacaataaaaaaacagtaaagtGGAAAGCTTGCACTAGGGGCCAGGGGATAGGGAGCAGTGAACACTATGTAGGGAACAAGTCAATCATACCAGTTTCTTTATGGATGTCTCTTCTAATGAGCCGGCTTTCTAAATCAGGTCTAAACTTAAGTTGTTGTGTGAATGAGGATTGAAAACTGGTGTGTTTGCTTATATTGTAAAtgccagagatgcccaaactggGGCCCATGGGTCAATGTTGACCCTTTgtatcctttgatttggcccaccagaGGGAAAATAATTGGGAAATCATTGGTTAAAtgcctttcaagagttcacacttagctgatgattgataataaagcttgtttggggTGCTgttctgggagagagccctgagcttgtaagatcctcgagccctgggctccctcctgttgcaaggcgagaggggagtttgagcccaggcagatctcgatgactccccctcctgcttattgtagctaagtgtcggatatggatgctgagaaggtgtactcagagtttgctaaaatattttggattaattgtttagggtgcttgtttttgaactgtggaaggaaactggagaacccgtggaaaacccacgcgatcacggggagaacgagcaaaactctgcacagaaatgacGCCTGGTttggaattaaaccaggggcattcttgctgtgaggcaacaatactaatc

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042693 muscle cell fate commitment biological_process
GO:0042694 muscle cell fate specification biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043009 chordate embryonic development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006413 translational initiation biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0021983 pituitary gland development biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005688 True 1898 lncRNA 0.40 2 11513386 11518739

Neighbor

gene id symbol gene type direction distance location
XLOC_001958 cwc27 coding upstream 11962 11398111 ~ 11501424 (+)
XLOC_001959 BX640403.1 coding upstream 14577 11498693 ~ 11498809 (+)
XLOC_001957 cops4 coding upstream 140845 11355841 ~ 11372541 (+)
XLOC_001955 NA coding upstream 201044 11260154 ~ 11312342 (+)
XLOC_001956 si:ch211-126i22.5 coding upstream 202617 11309814 ~ 11310769 (+)
XLOC_001961 NA coding downstream 133855 11652594 ~ 11665963 (+)
XLOC_001962 ppwd1 coding downstream 249052 11767791 ~ 11788565 (+)
XLOC_001963 CR925713.2 coding downstream 255666 11774405 ~ 11774519 (+)
XLOC_001964 NA coding downstream 407334 11926073 ~ 11927986 (+)
XLOC_001965 NA coding downstream 409350 11928089 ~ 11929132 (+)
XLOC_001954 CR931761.1 non-coding upstream 397416 11115854 ~ 11115970 (+)
XLOC_001943 NA non-coding upstream 1217597 10288148 ~ 10295789 (+)
XLOC_001941 AL935269.1 non-coding upstream 1317784 10178101 ~ 10195602 (+)
XLOC_001966 CR388225.1 non-coding downstream 814514 12333253 ~ 12333369 (+)

Expression


Co-expression Network