XLOC_001961


Basic Information

Item Value
gene id XLOC_001961
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11652594 ~ 11665963 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005835
aGAGAGCTCAAGACATTTGCACTATCTCCATTGTTCAGGTTGTTATGACCAAGCAGGGAAGTTATTTCGACCCAGGAGGGCAGCTAAAACGAGGTAAAGCAGTAGTGAGAGGAACTAAACAGGGACCCATTCAGCTTTGTTCTGGCTTACTTTGCCTACTTACGCTGGGCTGTCACAGTGTCGCATGGACGAGGAGACGCCACCGCCGCAGGTTCGACTGCACTCACCCCAGACTGTCCACGGGCCCCAGCTGCCATCCACACTCTGCGGCCATGTCCCAAACGCCACACATTCACCCTGATAACACCACTAGACACACACAGAGGGAGGAAATAGTTGCCCAAATAAATATACAGAGATTGTTCAGAGCCACTGATGTGATCCAAGTCCTGTGAAGAGACgatgccaaccatagaggacttcaAGAGGTCTCCATAACAGAGCATAATTAGTAAAGTTGTTCCTTGCCacaggcttgcttggtttgggactttcagcagtgaaaaattAAACCAccgaactgaactgaactgaacttaaaatcTAAACTGAcacaatttcagtttaatttcaaTATCAATTcaatagaacttctatgttaagctgctttgacacaaatcTACATTGTAAGAGCACTATAGTAATAAATAAGAATTGACTTCAATTGAATATAATAGATTATATAAACCAAATCAGAGTTTatattaaagtgacagttcactcaaaaaaagttGACTAATTTCTTGACCCTTTTACTCACCCAAATTTAAAAGAGTTTCTTTTTAGGAGTATCTTACTGACATCCATAGCAAAGaaaatatactatggaagtcaatatctacttcttttgtgtttaacagaagaaagaaactcaagcatgttagtattcatttttgggtgaactgtctctttaaatagaGTCAATCTTGCCAGTTGTGAACTGGAAGCGTCCTAAGCAGCACATTAATAATGAACTCTGCCTTGAAATGCGTGGCTTTCTAGCACTGTGCTTCCTGCAGTGTTCGACAGTCTGTCTTTACGACGTGACAAATTCATTATCATTGTTGCTGGTTGAAAGCACATTCAGTAGCATGTGTGGTCATCGCTGCTTCCGTGCCTTTCCATCTCTGGTCTTTCTGGAGCTGGCAGGGCCTCCACTCCATTACACGCTAAGTGAGAAATGGCTGACATTCGTATTCCTTTGATGCTGACCCAGACATAAGTACGCCActcgctaaaaaaaaaaacagcggcTCAACCTGAAGCTCGCGGCTTGTCCAAGAAAGCTCACAAGAGCTAGCCGGTAAATAGATCCAGTGAGCGAATGGTAACAGAGACAGACAGCTCATGGTCCTCTTCTATTCTTCCTCTTGAGCCGTCCTATGAGCGAGTACAATGACCACCGTAATCTTTGTTCAAACTGTCTCTCGAACCGGGCCCAGCAGAAATGTGAACTGATGACCCAAACGCTGAGCGCATGAGTGAACATTGGGAAGAGGCTTTCTTATTCCCATATCTGCTACAATGAGAGCGGAGCCATGAGCGCTTATTTTcctaattttttgtattttataactTTTAGATATATgatttaactgagcaaggaaattttcacagcatgtctgataatactttttcttctggaaaaagtcctatttgttttatttcagctagaaaaaaaaagttgttttaatttataaaagcaattttaaggtcaaaattattagtccctttcagcaaatgttttttcgataatctacagaacaaatcatgctattgtgcatgtgttgtgagaaaatgcagcttgttttcttaatttgtttgcatcTTTTGTAAATGCATGTGTTTTCATAAATTgaagcatgttaagctctctcgggcCACAGGACTGTGATGCACAGTTAAGTAATGCCAACGATTAAAGACTTACAATAAAGTCATGTTAGCCAATCTGAAAGGAGAAACAATGCAACACACTGTCATCATGGTGCAAAATCTGTGGTATTGTGGCCACACGACCAAACTGTTACCAGAGTTTTTGAAAATCTTTTTTGCATAAACCTTTGGTGTTAGTTACCTGACACTGCGTTTTTGTGTGGACGAATGGCTAAACAGTATAAACAGTATCTTTTTTTGATAAATTGGTcagaatatttgaaaaaggactGACTCATTGACTGTGACAACAATCATACAGagcataaataattatttctattGAATTAATTCTCTTTATTTACAATGTTGCTTTCAAGCAGTCTCCAGCTGGACCTAGGTCCAAGTGCCTGCCGCAAGAACTTTATTCAAAAGCTGATGTgttacaacaataaaaataaaatgtaaaatgtaaaatttttcttaaaataaagcaTCAATTGGGGTCTTAAAATCTCAAATCTGGTTTTCATTTATTGTGTGAAACTAACACTTATGGGAAACGAAAATATGAAACCTGACAGTAAATTGACCTGTAAAGTAACACttctaaaaaaacagaaaacatattggcatcttcattttaaaagtatttcagaagtttttaagtaaatttataataacaatatttgaTTATCTGCAATAACCTCCATTCTAAATAGCTATATCGTTAAATATATCGTAACCCTGAAATAAAAAGAATTTCGGTTATATCACTCACCCGTATTATAACCTTCATCCATTGCATAAAGTTTTGGGATGGGACGCTGACTTACCCCTTTTTCAATAGTGTTAGTCTGGCACAGGGTTCCTTCTGCGGCAGGGATACTGTTGGTGACACAGCGGTTACTTTTGCTAAGGCACCAGAGCTCTCTACACACTTCCTAGGAAAGAAGGCAAAAGCAAGTTGATCAGAATATAGAAATTCCCAAGAGAGACCAGAACAAGTGGACACAAGACCAGCAGAATGTGGTGGGCAGGCTTCACAAACAGGCTTTTTAGAGATTGCATGAAAACATGTCTTCTTAATAATGTTTAATGAATTGTAGATTCAGATGTTAGGATTGATTCACATTTTAGTTCGTAAACAATTTTggacagctgtttttttttccaccaatcTAAACTTACACATGTATGTTTGATAGTCTACATTTTTTCATGGAAGTAAGTTGCTATACCTGGTTTGTAAATGAATTTGTgataaaataaagtgaatttagG
>TCONS_00005836
GTTATTTCGACCCAGGAGGGCAGCTAAAACGAGTGTCGCATGGACGAGGAGACGCCACCGCCGCAGGTTCGACTGCACTCACCCCAGACTGTCCACGGGCCCCAGCTGCCATCCACACTCTGCGGCCATGTCCCAAACGCCACACATTCACCCTGATAACACCACTAGACACACACAGAGGGAGGAAATAGTTGCCCAAATAAATATACAGAGATTGTTCAGAGCCACTGATGTGATCCAAGTCCTGTGAAGAGACgatgccaaccatagaggacttcaAGAGGTCTCCATAACAGAGCATAATTAGTAAAGTTGTTCCTTGCCacaggcttgcttggtttgggactttcagcagtgaaaaattAAACCAccgaactgaactgaactgaacttaaaatcTAAACTGAcacaatttcagtttaatttcaaTATCAATTcaatagaacttctatgttaagctgctttgacacaaatcTACATTGTAAGAGCACTATAGTAATAAATAAGAATTGACTTCAATTGAATATAATAGATTATATAAACCAAATCAGAGTTTatattaaagtgacagttcactcaaaaaaagttGACTAATTTCTTGACCCTTTTACTCACCCAAATTTAAAAGAGTTTCTTTTTAGGAGTATCTTACTGACATCCATAGCAAAGaaaatatactatggaagtcaatatctacttcttttgtgtttaacagaagaaagaaactcaagcatgttagtattcatttttgggtgaactgtctctttaaatagaGTCAATCTTGCCAGTTGTGAACTGGAAGCGTCCTAAGCAGCACATTAATAATGAACTCTGCCTTGAAATGCGTGGCTTTCTAGCACTGTGCTTCCTGCAGTGTTCGACAGTCTGTCTTTACGACGTGACAAATTCATTATCATTGTTGCTGGTTGAAAGCACATTCAGTAGCATGTGTGGTCATCGCTGCTTCCGTGCCTTTCCATCTCTGGTCTTTCTGGAGCTGGCAGGGCCTCCACTCCATTACACGCTAAGTGAGAAATGGCTGACATTCGTATTCCTTTGATGCTGACCCAGACATAAGTACGCCActcgctaaaaaaaaaaacagcggcTCAACCTGAAGCTCGCGGCTTGTCCAAGAAAGCTCACAAGAGCTAGCCGGTAAATAGATCCAGTGAGCGAATGGTAACAGAGACAGACAGCTCATGGTCCTCTTCTATTCTTCCTCTTGAGCCGTCCTATGAGCGAGTACAATGACCACCGTAATCTTTGTTCAAACTGTCTCTCGAACCGGGCCCAGCAGAAATGTGAACTGATGACCCAAACGCTGAGCGCATGAGTGAACATTGGGAAGAGGCTTTCTTATTCCCATATCTGCTACAATGAGAGCGGAGCCATGAGCGCTTATTTTcctaattttttgtattttataactTTTAGATATATgatttaactgagcaaggaaattttcacagcatgtctgataatactttttcttctggaaaaagtcctatttgttttatttcagctagaaaaaaaaagttgttttaatttataaaagcaattttaaggtcaaaattattagtccctttcagcaaatgttttttcgataatctacagaacaaatcatgctattgtgcatgtgttgtgagaaaatgcagcttgttttcttaatttgtttgcatcTTTTGTAAATGCATGTGTTTTCATAAATTgaagcatgttaagctctctcgggcCACAGGACTGTGATGCACAGTTAAGTAATGCCAACGATTAAAGACTTACAATAAAGTCATGTTAGCCAATCTGAAAGGAGAAACAATGCAACACACTGTCATCATGGTGCAAAATCTGTGGTATTGTGGCCACACGACCAAACTGTTACCAGAGTTTTTGAAAATCTTTTTTGCATAAACCTTTGGTGTTAGTTACCTGACACTGCGTTTTTGTGTGGACGAATGGCTAAACAGTATAAACAGTATCTTTTTTTGATAAATTGGTcagaatatttgaaaaaggactGACTCATTGACTGTGACAACAATCATACAGagcataaataattatttctattGAATTAATTCTCTTTATTTACAATGTTGCTTTCAAGCAGTCTCCAGCTGGACCTAGGTCCAAGTGCCTGCCGCAAGAACTTTATTCAAAAGCTGATGTgttacaacaataaaaataaaatgtaaaatgtaaaatttttcttaaaataaagcaTCAATTGGGGTCTTAAAATCTCAAATCTGGTTTTCATTTATTGTGTGAAACTAACACTTATGGGAAACGAAAATATGAAACCTGACAGTAAATTGACCTGTAAAGTAACACttctaaaaaaacagaaaacatattggcatcttcattttaaaagtatttcagaagtttttaagtaaatttataataacaatatttgaTTATCTGCAATAACCTCCATTCTAAATAGCTATATCGTTAAATATATCGTAACCCTGAAATAAAAAGAATTTCGGTTATATCACTCACCCGTATTATAACCTTCATCCATTGCATAAAGTTTTGGGATGGGACGCTGACTTACCCCTTTTTCAATAGTGTTAGTCTGGCACAGGGTTCCTTCTGCGGCAGGGATACTGTTGGTGACACAGCGGTTACTTTTGCTAAGGCACCAGAGCTCTCTACACACTTCCTAGGAAAGAAGGCAAAAGCAAGTTGATCAGAATATAGAAATTCCCAAGAGAGACCAGAACAAGTGGACACAAGACCAGCAGAATGTGGTGGGCAGGCTTCACAAACAGGCTTTTTAGAGATTGCATGAAAACATGTCTTCTTAATAATGTTTAATGAATTGTAGATTCAGATGTTAGGATTGATTCACATTTTAGTTCGTAAACAATTTTggacagctgtttttttttccaccaatcTAAACTTACACATGTATGTTTGATAGTCTACATTTTTTCATGGAAGTAAGTTGCTATACCTGGTTTGTAAATGAATTTGTgataaaataaagtgaatttagG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005835 False 3159 lncRNA 0.38 4 11652594 11665963
TCONS_00005836 True 3014 lncRNA 0.38 3 11652749 11665963
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_001960 NA coding upstream 133855 11513386 ~ 11518739 (+)
XLOC_001958 cwc27 coding upstream 151170 11398111 ~ 11501424 (+)
XLOC_001959 BX640403.1 coding upstream 153785 11498693 ~ 11498809 (+)
XLOC_001957 cops4 coding upstream 280053 11355841 ~ 11372541 (+)
XLOC_001955 NA coding upstream 340252 11260154 ~ 11312342 (+)
XLOC_001962 ppwd1 coding downstream 101828 11767791 ~ 11788565 (+)
XLOC_001963 CR925713.2 coding downstream 108442 11774405 ~ 11774519 (+)
XLOC_001964 NA coding downstream 260110 11926073 ~ 11927986 (+)
XLOC_001965 NA coding downstream 262126 11928089 ~ 11929132 (+)
XLOC_001966 CR388225.1 coding downstream 667290 12333253 ~ 12333369 (+)
XLOC_001954 CR931761.1 non-coding upstream 536624 11115854 ~ 11115970 (+)
XLOC_001943 NA non-coding upstream 1356805 10288148 ~ 10295789 (+)
XLOC_001971 NA non-coding downstream 1632761 13298724 ~ 13304277 (+)

Expression

Expression of XLOC_001961 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.6.
End of interactive chart.

Expression of XLOC_001961 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 0.6.
End of interactive chart.

Co-expression Network