XLOC_001964


Basic Information

Item Value
gene id XLOC_001964
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11926073 ~ 11927986 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005690
GTTGAATTTCTGGTGTAAGCTCATGTAGTGTTTTAGTGTTAAAATCTAAGTGTACATATACTGTTTTTAACGCTGATGTGGGTTAAATTGTGACTTTAACAGTGTGTATTATTGGTGTTGCCTTTCCATACTCCTCATCGGTGTTAATTGCACATACGGGAACTTGAGGTGACTGAGTCAATACGGTCCGCATTTGACGATAAACTTTTCATTAATGGCTGCTCCTGCTGGACAGATTCCTGCCGGAAACTTGACATAAAAGCAATCGAAAGACACGCAAGTcggaatttttacattttagaattaaGAAGCCGGTTTAGCAACTTTAAAATCCGGGATTGTGGGACTATACCCGTGAATCATTACAGCATCAGCCACACAAAGCCATAGGTGTTGAGGACCCCCTCGTGAGTCATCAACACGGAGCGGAGCGATGGCAGCAGCAAGTTTTCCGCTCATTTAATGCCAAAACAGACTCGACGCCTTGCGTGTCACGCTGGAAAAATAACGAACTATGCATGAAGCAAGTAGAATCAAAAATGATCAACAGAATGCTGTTTAAAGTACAGTATCAAGCTCGTAAGAGATACATGAAGCTTCCAGTATTGGAATATGATGCCCTTATACGGGAAGGTAAGttttcatacaattttttttgatacctggcattttttttgtt
>TCONS_00005689
GTTGAATTTCTGGTGTAAGCTCATGTAGTGTTTTAGTGTTAAAATCTAAGTGTACATATACTGTTTTTAACGCTGATGTGGGTTAAATTGTGACTTTAACAGTGTGTATTATTGGTGTTGCCTTTCCATACTCCTCATCGGTGTTAATTGCACATACGGGAACTTGAGGTGACTGAGTCAATACGGTCCGCATTTGACGATAAACTTTTCATTAATGGCTGCTCCTGCTGGACAGATTCCTGCCGGAAACTTGACATAAAAGCAATCGAAAGACACGCAAGTcggaatttttacattttagaattaaGAAGCCGGTTTAGCAACTTTAAAATCCGGGATTGTGGGACTATACCCGTGAATCATTACAGCATCAGCCACACAAAGCCATAGGTGTTGAGGACCCCCTCGTGAGTCATCAACACGGAGCGGAGCGATGGCAGCAGCAAGTTTTCCGCTCATTTAATGCCAAAACAGATGATCAACAGAATGCTGTTTAAAGTACAGTATCAAGCTCGTAAGAGATACATGAAGCTTCCAGTATTGGAATATGATGCCCTTATACGGGAAGGTAAGttttcatacaattttttttgatacctggcattttttttgtt

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048869 cellular developmental process biological_process
GO:0031099 regeneration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048699 generation of neurons biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005690 False 679 lncRNA 0.41 4 11926073 11927986
TCONS_00005689 True 614 lncRNA 0.40 3 11926073 11927986

Neighbor

gene id symbol gene type direction distance location
XLOC_001962 ppwd1 coding upstream 137508 11767791 ~ 11788565 (+)
XLOC_001963 CR925713.2 coding upstream 151554 11774405 ~ 11774519 (+)
XLOC_001961 NA coding upstream 260110 11652594 ~ 11665963 (+)
XLOC_001960 NA coding upstream 407334 11513386 ~ 11518739 (+)
XLOC_001958 cwc27 coding upstream 424649 11398111 ~ 11501424 (+)
XLOC_001965 NA coding downstream 103 11928089 ~ 11929132 (+)
XLOC_001966 CR388225.1 coding downstream 405267 12333253 ~ 12333369 (+)
XLOC_001967 CT990561.1 coding downstream 589073 12517059 ~ 12730451 (+)
XLOC_001968 lpar1 coding downstream 1072384 13000370 ~ 13064110 (+)
XLOC_001969 rassf6 coding downstream 1281594 13209580 ~ 13236012 (+)
XLOC_001959 BX640403.1 non-coding upstream 427264 11498693 ~ 11498809 (+)
XLOC_001955 NA non-coding upstream 613731 11260154 ~ 11312342 (+)
XLOC_001971 NA non-coding downstream 1370738 13298724 ~ 13304277 (+)
XLOC_001972 BX957308.1 non-coding downstream 1928806 13856792 ~ 13894856 (+)
XLOC_001973 BX000705.2 non-coding downstream 2002862 13930848 ~ 13931718 (+)

Expression


Co-expression Network