tmem45a (tmem45a)


Basic Information

Item Value
gene id tmem45a
gene name tmem45a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 260364 ~ 306047 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021583381.2
AAAAATGCATAAAACATCATTTACAATCATCAGAAAAGTGGTTGTGAATGTAGCTAGTTGGGAGATGGGACGACTGGTATAATAATAACCGACTCACCTCTTTggaagatactgtatgtaggctaaTTTTCTTTTTGGAAGATGGTTAAACTGTGCACATTGGATTAATATAAAATGTGAATGTTTCGACATACGGAACCGTTTTAGGAACTTTGGCGAAcggatattttttttgtgtggaaaCAATCTAACTACGgtaTTCCAGTGAAGGATTATGGGTAGTTTTAAGGGCCATGCATTGCCGGGTAGTTTCTTCCTGATCGCGGGTCTGTGGTGGGCAGGAAAGTACTCTCTATGGTACGCCACCCTCAGGAACAAGAGTCTGGGCTCCACCTCCACCCGCCTGGCCAGCCGATCCACACAGCGCCGCCTGGAAGTCATCGAGGGATCAGTCACCCTCTTCTTCTCCGTGGTTGGGATGCTGGCGGAGCAGTTTGTAGCAGATGGACCACGGCTGCACCTGTATGACTACAGTGAGCATCACTGGGACAGACTCCATAACTGGCAGCACTCCACCATGTACCTCTTCTTTGGCTTGGCTGGAGCCATGTCTCTGATTGTACACACCACCGACGCTGCTCCACTGGCCCTCGACAGACTAATGCTGGCCATCGCCTTCTTCATAGAAGGGTTCCTTTTCCTGTACCACCTCCACGGCAGAGCCATGCTAGATGTCCATGTTCACCAGCTGctgctgttctgtgtgtttggagAGGCCATGGTGTCCTTTCTGGAGGTGTTCCACAGAGGAAACATGCTGCTGGAGCTTCTGAGAGCATCACTCACCATCCTGCAGGGGAGCTGGTTCTGGCAGATTGGGTTTGTCCTGTATTCCCCCAGTGGTGCAGAGTGGGACCAGAAGGACCATAACAACATGATGTTTATCACTATGTGTTACTGCTGGCACCTGGTCTTCAGCCTGCTTATTGTGTCAGTGCTGTACTGCACCATCATCTGTGTGGTACGATCCAGATTGAAGAGAACCCCCCCAATGGAGATGGGACTGCTgaaacccagagagagacagcaggagtcAGAGGACGAGATCCTATAAGGACAACAACAACTTCCTGTTTAGCagtctcaatcaatcaatcaaatgtatttataaagccctttttacatcagcagatgtcacaaagtgctatacagaaacccaacctaaaaccccaaacagcaagcaatgcagatgtagaagcatggtggcaag

Function

symbol description
tmem45a Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in notochord and polster. Orthologous to human TMEM45A (transmembrane protein 45A).

NR:

description
transmembrane protein 45A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021583381.2 True 1270 mRNA 0.48 6 260364 306047

Neighbor

gene id symbol gene type direction distance location
sft2d2a sft2b coding downstream 16745 237111 ~ 243619 (-)
LOC110523811 LOC106574160 coding downstream 62937 32649 ~ 197427 (-)
LOC118964585 NA coding upstream 196705 502752 ~ 504254 (-)
plcxd1 LOC106574112 coding upstream 327239 631974 ~ 681917 (-)
LOC110520928 jade3 coding upstream 396479 702526 ~ 736791 (-)
rp2 LOC106574114 coding upstream 443394 749441 ~ 771316 (-)
chst7 chst7 coding upstream 709695 1015742 ~ 1040056 (-)
G262 NA non-coding downstream 45133 213717 ~ 215231 (-)
G231 NA non-coding downstream 87167 172931 ~ 173197 (-)
G196 NA non-coding downstream 140109 117036 ~ 120255 (-)
G220 NA non-coding downstream 143563 98995 ~ 116801 (-)
G203 NA non-coding downstream 234125 25846 ~ 26239 (-)
G292 NA non-coding upstream 5368 311415 ~ 314707 (-)
G290 NA non-coding upstream 11692 317739 ~ 321760 (-)
G331 NA non-coding upstream 28305 334352 ~ 337594 (-)
G291 NA non-coding upstream 38910 344957 ~ 345409 (-)
G337 NA non-coding upstream 44745 350792 ~ 358648 (-)
G202 NA other downstream 234691 25269 ~ 25673 (-)
G1355 NA other upstream 664138 970185 ~ 976099 (-)
G1651 LOC106574119 other upstream 1447198 1753245 ~ 1760430 (-)
G1788 NA other upstream 1786363 2092410 ~ 2097715 (-)
G1954 NA other upstream 2227983 2534030 ~ 2534513 (-)

Expression


Co-expression Network