plcxd1 (LOC106574112)


Basic Information

Item Value
gene id plcxd1
gene name LOC106574112
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 631974 ~ 681917 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977465.1
CTGGCAGAATACTGGTGCCGCCTTCACTAAACTAGCGTAGCCTGGGGACCGGTAGGTCCGGAAGAAAATTACTATTCTGAAAAAAAAGGTATCCGCTAATATAATCATGTATGTACAGTTTCATATTTGGCAAAAACGATAGACCCATAAAGACACCGGTGATGGAAAGAAGGTCTCGGAAGGAGCAGACTGGGCCGGCTTCCGTTTGATATCAGCGCACATTACAGGGAAGCATCGGACAAGTACTCGCAAAGTGCACTTGATTTGACACCACGTACTATAGAGActagtttttttttctctgttCCCACCTTGTGTTTTGTGGATTTTTTGGAATAGACGTAGTCTTGTGGGACACCCTTTTGTTTTTTTTCAGTCACCCATACCACGGTTTCTTTTTAAACTGGATTGGTCAGCAGCTGGCAGCTAGTGCTGCATAATTTGAAACCACCCACAAATGTCCTCAGAGGTGGTGTCAGAAGTGCAGGTGTCTCTGAAGGAACTTCCCATGGACAGCTGGATGGATCACCTGCCCTGTGCTCTATGGGACGTTCCCCTGAGGAACCTAGCTATACCAGGAAGCCATAATGCCATAACCTACTGTCTGGATAGGAGTGACCGCTCCCCTGTCGACCTGACCCAACCTGATTTGCTGCAGAAGCTAGACAAATACATGAAGCCCCTGATACGACCGTTTGTTTATAAATGGGCAGTTACACAGGAGGCGACAGTGAAGGAGCAGCTAGACTGTGGCGTCAGATATCTTGACCTGAGGATTGCACATCGACCCAACGACacctctactgacctgtacttCTACCATGGAGTATACACTACGCTCACAGTAGAGACCGTTCTTCAGGAGATCAGATCCTGGCTAGATGTCCATTCTAGAGAGGTGGTTCTGCTGTCCTTCAGTCACTTCCTGGGTCTGAACCAGGACCTCCACACTGGACTTATATCCACCATCAGAACCATCTTCACCGCCAGGCTCTGTCCAACTACGGAAGTGGTGACGCTGAGGAACCTGTGGTCGTTGGGTTACCAGGTGATTGTCTCCTATGAGCACAGCATGGTCAGCCTCTATAGCGACCTTTGGCCTCACATCCCCTACTGGTGGGCCAACAAGTGTAAAGCTGAGGCTCTGATCGAGGAGTTCGAACACAGGAAACAACATGGCCGCCCAGGAGGGTTCTTTGTGACGGGCATCAACCTGACAGAGGATCTGAAGTACATCTGTTCTCACCCCACTGAGTCTCTGAAGGACCTGGTGATGTCCACCTACCCTGCCCTGCTCTCCTGGGTCAGGGGCCAGAGCCCCGGCTCCGACTCCCGCTCCCTCAACATCATAGCTGGGGACTTTGTCTCAGAGAGCCACTTCGTACCCACCGTCATCGCACTGAATCAACATTTAGTCCACTGCACTGGTCCTTGTGATGTTAGCAGAGGAAACTGACCCAGctgctgtgtcccaaatgacaccatattaCCTCTGTagcccataggcctctggtcaaagtcatgtgtgtagggaatagggtgccatttgggatgcattatCTGACACATCTTATTGCACAGAATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAAGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATGTAATAGAACTTtgcttgtaaaaaaa
>XM_036977490.1
CTGGCAGAATACTGGTGCCGCCTTCACTAAACTAGCGTAGCCTGGGGACCGGTAGGTCCGGAAGAAAATTACTATTCTGAAAAAAAAGGTATCCGCTAATATAATCATGTATGTACAGTTTCATATTTGGCAAAAACGATAGACCCATAAAGACACCGGTGATGGAAAGAAGGTCTCGGAAGGAGCAGACTGGGCCGGCTTCCGTTTGATATCAGCGCACATTACAGGGAAGCATCGGACAAGTACTCGCAAAGTGCACTTGATTTGACACCACGTACTATAGAGActagtttttttttctctgttCCCACCTTGTGTTTTGTGGATTTTTTGGAATAGACGTAGTCTTGTGGGACACCCTTTTGTTTTTTTTCAGTCACCCATACCACGGTTTCTTTTTAAACTGGATTGGTCAGCAGCTGGCAGCTAGTGCTGCATAATTTGAAACCACCCACAAATGTCCTCAGAGGTGGTGTCAGAAGTGCAGGTGTCTCTGAAGGAACTTCCCATGGACAGCTGGATGGATCACCTGCCCTGTGCTCTATGGGACGTTCCCCTGAGGAACCTAGCTATACCAGGAAGCCATAATGCCATAACCTACTGTCTGGATAGGAGTGACCGCTCCCCTGTCGACCTGACCCAACCTGATTTGCTGCAGAAGCTAGACAAATACATGAAGCCCCTGATACGACCGTTTGTTTATAAATGGGCAGTTACACAGGAGGCGACAGTGAAGGAGCAGCTAGACTGTGGCGTCAGATATCTTGACCTGAGGATTGCACATCGACCCAACGACacctctactgacctgtacttCTACCATGGAGTATACACTACGCTCACAGTAGAGGAAGTGGTGACGCTGAGGAACCTGTGGTCGTTGGGTTACCAGGTGATTGTCTCCTATGAGCACAGCATGGTCAGCCTCTATAGCGACCTTTGGCCTCACATCCCCTACTGGTGGGCCAACAAGTGTAAAGCTGAGGCTCTGATCGAGGAGTTCGAACACAGGAAACAACATGGCCGCCCAGGAGGGTTCTTTGTGACGGGCATCAACCTGACAGAGGATCTGAAGTACATCTGTTCTCACCCCACTGAGTCTCTGAAGGACCTGGTGATGTCCACCTACCCTGCCCTGCTCTCCTGGGTCAGGGGCCAGAGCCCCGGCTCCGACTCCCGCTCCCTCAACATCATAGCTGGGGACTTTGTCTCAGAGAGCCACTTCGTACCCACCGTCATCGCACTGAATCAACATTTAGTCCACTGCACTGGTCCTTGTGATGTTAGCAGAGGAAACTGACCCAGctgctgtgtcccaaatgacaccatattaCCTCTGTagcccataggcctctggtcaaagtcatgtgtgtagggaatagggtgccatttgggatgcattatCTGACACATCTTATTGCACAGAATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAAGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATGTAATAGAACTTtgcttgtaaaaaaa
>TU1542
AGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAAGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATACCATGTTTTAACTATGCTGTAGAAGAGGATGGGACTGCAGCATGATGTAATAGAACTTtgcttgtaaaaaaaacaaaaaaacaacttgAACAATAGATTCTGATAGGATATATTTGCACAATTATATTGCCGACAGTGAAATGTTTGCCTGTTgagctcctctcttctcttcctgtgttGACctgctctctttttccctctgatcTGCACTGATTTATTGATCTCTttactagccctaaccctaaccttCTAACCCTCTATCCCTAACCCTCCTCTAACTCTCTAAccctcctaactctaaccctctatctctaaccctactctaactctccaactctctaaccctcctctaactctttaaccctcctctaaccctcctctaacccccctctaaccctcctctaactCTCCAACCCCCATCTaactctctaaccctcctctaactCTCTGATCCTCCTCTAATCCTCCAACTAATGTATGTATTTCATATCTCAGGCAATGTGGCCatattttaaaatgttcctttgaCCTAAGCAATAATGAATGTTCTGTCTAAAACCTCTGTAACCATCTCCGACTATAACGAGTGCTAACAATAATACAGCCTCTTCCATAGAGCACAAAACTATGATGGTGTCACAAATGGAACCAGAcgctaaatagtgcactacttttcaccagacccttatgggccctgatcaaaagtagtgcactatgtagggaatagggtgccatttggcaagcAAAACCACGTTACAAATGGTTAGCACCTACGATGTATTTCCATTAGATATCCAGGATTTGTGGTTAAAGAATGCTTGTATCTCCCTAGTTATATCGTTAATGCTGTACCAACTGAAGAACAAGTCTGTCCCAaaaggctccctattccctacgcggtgcacttcttttgactagagcccatagggaatagggtgcacttcttttgaccagggcccatagggaatagggagccatttggaatGCACCTCAGATCAAACCTACATGAACCATTGCATGATATCAGACGCACAACTCTGAGCATGACCTATGACTGTGCTACAGCTGAGTTATGACCCTTAACTCTTTCAGAAGCATGCCTTCATTACTACTGAAAAGACATGTGCCTGTGGACAAGATTAGCCTTTCCAGAAGACAGGATGAGCATTTTGAATAGAGAGACAATCTACAGAATGTTTTACC
>TU1544
CTTCACTAAACTAGCGTAGCCTGGGGACCGGTAGGTCCGGAAGAAAATTACTATTCTGAAAAAAAAGGTATCCGCTAATATAATCATGTATGTACAGTTTCATATTTGGCAAAAACGATAGACCCATAAAGACACCGGTGATGGAAAGAAGGTCTCGGAAGGAGCAGACTGGGCCGGCTTCCGTTTGATATCAGCGCACATTACAGGGAAGCATCGGACAAGTACTCGCAAAGTGCACTTGATTTGACACCACGTACTATAGAGActagtttttttttctctgttCCCACCTTGTGTTTTGTGGATTTTTTGGAATAGACGTAGTCTTGTGGGACACCCTTTTGTTTTTTTTCAGTCACCCATACCACGGTTTCTTTTTAAACTGGATTGGTCAGCAGCTGGCAGCTAGTGCTGCATAATTTGAAACCACCCACAAATGTCCTCAGAGGTGGTGTCAGAAGTGCAGGTGTCTCTGAAGGAACTTCCCATGGACAGCTGGATGGATCACCTGCCCTGTGCTCTATGGGACGTTCCCCTGAGGAACCTAGCTATACCAGGAAGCCATAATGCCATAACCTACTGTCTGGATAGGAGTGACCGCTCCCCTGTCGACCTGACCCAACCTGATTTGCTGCAGAAGCTAGACAAATACATGAAGCCCCTGATACGACCGTTTGTTTATAAATGGGCAGTTACACAGG

Function

NR:

description
PREDICTED: PI-PLC X domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977465.1 False 1892 mRNA 0.48 7 633286 681917
XM_036977490.1 False 1736 mRNA 0.48 6 633286 681917
TU1542 False 1413 lncRNA 0.57 2 631974 633567
TU1544 True 701 TUCP 0.54 3 649951 681896

Neighbor

gene id symbol gene type direction distance location
LOC118964585 NA coding downstream 129032 502752 ~ 504254 (-)
tmem45a tmem45a coding downstream 327239 260364 ~ 306047 (-)
sft2d2a sft2b coding downstream 389667 237111 ~ 243619 (-)
LOC110523811 LOC106574160 coding downstream 435859 32649 ~ 197427 (-)
LOC110520928 jade3 coding upstream 20609 702526 ~ 736791 (-)
rp2 LOC106574114 coding upstream 67524 749441 ~ 771316 (-)
chst7 chst7 coding upstream 333825 1015742 ~ 1040056 (-)
nipa2 nipa2 coding upstream 618652 1300569 ~ 1311792 (-)
nipa1 nipa1 coding upstream 631589 1313506 ~ 1317525 (-)
G1216 NA non-coding downstream 22460 607905 ~ 610826 (-)
G1194 NA non-coding downstream 75712 557341 ~ 557574 (-)
G1162 NA non-coding downstream 132489 495190 ~ 500797 (-)
G1163 NA non-coding downstream 145329 484509 ~ 487957 (-)
G1178 NA non-coding downstream 158625 474314 ~ 474661 (-)
G1253 NA non-coding upstream 6848 688765 ~ 688992 (-)
G1258 NA non-coding upstream 16506 698423 ~ 698653 (-)
G1265 NA non-coding upstream 45566 727483 ~ 728304 (-)
G1294 NA non-coding upstream 119013 800930 ~ 808066 (-)
G1314 NA non-coding upstream 162453 844370 ~ 844736 (-)
G202 NA other downstream 607613 25269 ~ 25673 (-)
G1355 NA other upstream 288268 970185 ~ 976099 (-)
G1651 LOC106574119 other upstream 1071328 1753245 ~ 1760430 (-)
G1788 NA other upstream 1410493 2092410 ~ 2097715 (-)
G1954 NA other upstream 1852113 2534030 ~ 2534513 (-)
G2192 NA other upstream 2060970 2742887 ~ 2743574 (-)
plcxd1 LOC106574112 other upstream 16384 631974 ~ 681917 (-)

Expression


Co-expression Network