chst7 (chst7)


Basic Information

Item Value
gene id chst7
gene name chst7
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1015742 ~ 1040056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584115.2
ATTGTTCAACTCTTTCTTCTTGTTGGTCTCAGCCTTCACAGAGCGGCATCGAACCCAACAACAGCCCTGTCTATCTGTGAGAGAGGGAAATGAAAAGGAGGCTACAGAAGAAATACTTCATTTTAATTATAGGATATTCCGTGTTACTTCTGTTAATTCCGTATATGCTGGACTACAGGAGTAAATCAGGGCATATTAAACATGGCAAGCAACAGCCGAGGTGCCCCGACCTCGATGTGTGGAATAACGGGGACAAGTTCAGCAACACTACGGCTACCGTGGAAGAGACGGTAGTCAACAGGAGCCAGTCTAAAATACACGTTTATTTACATGCTACATGGAGGACGGGGTCATCGTTCTTAGGAGAGTTATTCAATCAACACCCCGATGTGTTTTACCTCTACGAGCCCATGTGGCATATATGGCAGGCTCTCTATCCAGGAGATGcggtcagtctgcaaggagccgtgCGTGATATGATGAAGGCGTTATTACGATGCGACTTCTCAGTTTTAAAACTGTACACAGGGAGCCAAAATATCACCACGTCTTTTATATTTGGATGGAGAAAGAACAAAGTGATCTGCTCTGAACCTCTATGCGAGGCGTACAAGAGAAACGACGTGGGATTAGTCCAAGATGACGTCTGTGGGAAGTGTCCAAGGAAAGATATCAAAGAGTTGGAGAGGGAGTGCAAGAAGTACCGCGTCGTGGTAATCAAAGGTGTGCGGGTTCTGGACCTCGGTGTACTCGTCCCGTTAATGAGAGATCCCGCTTTAAATCTCCAGATCATTCAGTTGTTTAGAGACCCGCGGGCAGTGCACAATTCACGACTGAAATCGAAACAAGCTCTGGTCAAGGAGAGCATACAGGTACTGAGGAGTAAAAAACAGACGGAGAAATACAAGCGTCTACTGGTGCCAAACAACAGGGGGAACCGGGCAGAGAATTATGTATCTAGCGCAATGGAGCTAATATGTGACAACTGGCTGAACGACATGATGCTCATGATGAACGCGCCCCCCTGGGTGAAGAGGAATTACATCAAGATCCGCTACGAGGACTTGGTTCTACACCCCATGGAGGAACTCAGGAGACTCTACAGCTTCTCCAAACTCTCCTCCTTTCCTGCCATGGATAAGTTCGTGTTGAACATGACCCACGGACACGGTTACTCCTCAGACAAACCGTTTGTAATATCGTCCAGAGACGCTAAGGAAGCCATCTTCGCATGGAGAGAGCGGTTGAACATTGAGCAGATCTCCCAAGTGGAAGACTACTGCAGTGAGGTCATGAGACAACTGGGCTATCAGAAGAACAGTGTGGATCAAACATAGACATTACAGCATCAAGATGGTGGTGATGGAGGTGCCTGAAAATCATGGGGAAAAACTACGATGGCAGACTGGTGCCAAGGGAAGAGGAACTGAGAAGCAGCAAGACTGTTATGGGGTCTGTTTTCTTCAGCCAATCCTGTATGAACTGAAGGAGAGAGGATACACAGGGAAGGAGTCTGTCACGGGCTGGACAGAAGCATGTCAACATGAAGAGGACTTAGAGGGACATAATTGTGCTTGAGATGCTAAAATGAGTTGTGCTTCCTGTTTGTGGATCTGTCAAAAGTGTTTGATACTGCTTTTTTTATTGAACAAGTTGTCCTCCACTGGCCTGAGCTCATGACATCAATCACGATGTCCTGAGTCCGAATTTCTTGAAGTACGTAAAGGTGTTCCCCAGGGATCGATACTAGAACCTGCTCTTTTCATTATTTATATAAATGCTATTGGTCAATTTGTTTAATAAAATAATTTAACTCCTGTTTAA

Function

symbol description
chst7 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity and chondroitin 6-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and chondroitin sulfate biosynthetic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network. Is expressed in head; hindbrain; notochord; otic vesicle; and tail bud. Orthologous to human CHST7 (carbohydrate sulfotransferase 7).

NR:

description
carbohydrate sulfotransferase 7

GO: NA

KEGG:

id description
K04743 CHST7; chondroitin 6-sulfotransferase 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584115.2 True 1824 mRNA 0.46 2 1015742 1040056

Neighbor

gene id symbol gene type direction distance location
rp2 LOC106574114 coding downstream 244426 749441 ~ 771316 (-)
LOC110520928 jade3 coding downstream 278951 702526 ~ 736791 (-)
plcxd1 LOC106574112 coding downstream 333825 631974 ~ 681917 (-)
LOC118964585 NA coding downstream 511488 502752 ~ 504254 (-)
tmem45a tmem45a coding downstream 709695 260364 ~ 306047 (-)
nipa2 nipa2 coding upstream 260513 1300569 ~ 1311792 (-)
nipa1 nipa1 coding upstream 273450 1313506 ~ 1317525 (-)
LOC100135976 LOC100135976 coding upstream 742271 1782327 ~ 1821060 (-)
si:ch211-201h21.5 LOC106574205 coding upstream 929463 1969519 ~ 1973362 (-)
zgc:172121 mmum coding upstream 937547 1977603 ~ 1984335 (-)
G1365 NA non-coding downstream 2804 989911 ~ 1012938 (-)
G1367 NA non-coding downstream 15403 998716 ~ 1000339 (-)
G1355 NA non-coding downstream 39643 970185 ~ 976099 (-)
G1351 NA non-coding downstream 48188 965062 ~ 967554 (-)
G1337 NA non-coding downstream 69861 945567 ~ 945881 (-)
G1382 NA non-coding upstream 13631 1053687 ~ 1060337 (-)
G1398 NA non-coding upstream 56421 1096477 ~ 1098591 (-)
G1406 NA non-coding upstream 76430 1116486 ~ 1117390 (-)
G1411 NA non-coding upstream 80510 1120566 ~ 1121196 (-)
G1412 NA non-coding upstream 81698 1121754 ~ 1122431 (-)
sft2d2a sft2b other downstream 772319 237111 ~ 243619 (-)
G202 NA other downstream 990069 25269 ~ 25673 (-)
G1651 LOC106574119 other upstream 713189 1753245 ~ 1760430 (-)
G1788 NA other upstream 1052354 2092410 ~ 2097715 (-)
G1954 NA other upstream 1493974 2534030 ~ 2534513 (-)
G2192 NA other upstream 1702831 2742887 ~ 2743574 (-)
G2605 NA other upstream 1938559 2978615 ~ 2978916 (-)

Expression


Co-expression Network