LOC118964935


Basic Information

Item Value
gene id LOC118964935
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3291184 ~ 3294574 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981138.1
TGGTATTTCTCAAATGTATGCTTTAGTCACAACTACCAAGTCTAGGATGAGTGAACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGGAGCTTTGTGTTTCCGGTTAACTTGAtttgttttcacacactgttgctggtattttggccagtGGACCACTGGTGCTGTTGAATGCAGTATAGGTGTATGGAGCTCTCTACATGTAGAGTAGTCGGTCTGGGCTGCTGCTCTCCATTGCTGTAATGGGTCATACATGTTTCTGCTTTACATGGTGTTTGGTTGCAGGTTTCGTTTTTTGGGTTATTCATTGTCAAATCTTTAAAAACCAAAGCCATACTGCGACATTTTAGTAGCCTATCTAGGACTGTGGCATGTGTCTGAACACTCCCTCCTCTGTGCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGAACACACTCCCTCCTCTGTGCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGGCATGTGTCTGAACACTCTCCCTCCGCTGTGCTCTGTAAACGGGACTGTGACATGTGCCTGAACACTCTCCCTCAGCTGGGACACACAGAAAGCAGCGCAATTGATGTTGAATTCACAAAATGTGAGCGCATCAGGCTGTAATTTCATGAAGTAGATGACTCAACTGTTGACTCTGATTTATACACATTATGCTCATGTGTCCTATTGTCCTTCAACGTGTTCTGTAATGGCCTGTTAGAACTGAAACTTGGCATGGccatttaacctttaacctttcgGCCTGGTAGAACATTCGGTCTGTGCCGTAGGTGCTGTGCGCTGGctggctcgtgtgtgtgtgtgtgtgtgtgtgtttggtgcgcAGCATGTTGGCAGTGCTTGCTGGGACTTGTAGTGCATCGCATCTCAGCCTGTACGGTAGCAGGCCAAAATGAATTGAGAACCCAAATCAATGGGCAGGCTGGATAGATTTGTATCGTAGTCCCGGATTCGGCCCGCTGGCCTTGTGTTTTCCATGTGTTGTAAACTGTCGCGAAATAGCCATTAATGATCCAAACGGTTACATCATCAGGCCTGGGCTGTATCTAATGCCCCTTTCTGGGCCTTCTGAACTGTCCAGAATAGACCCATACGGATCCAAACGGTTACATCATCAGGCCTCGGCTGTATCTAATGCCCCTTTCTGGGCCTTCTGAACTGTCCAGAATAGACCCATACGGATCCAAACGGTTACATCATCAGGCCTCGGCTGTATCTAATGCACCTTTCTGGGCCTTCTGAACTGTCCAGAAAAGATCCAAACGGTTACATCATCAGGCCTGGGCTGTATCTAATGCACCTTTCTGGGCCTTCTGAACTGTCCAGAAT
>XR_005052263.1
GTGGTATTTCTCAAATGTATGCTTTAGTCACAACTACCAAGTCTAGGATGAGTGAACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGACTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCTGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGGAGCTTTGTGTTTCCGGTTAACTTGAtttgttttcacacactgttgctggtattttggccagtGGACCACTGGTGCTGTTGAATGCAGTATAGGTGTATGGAGCTCTCTACATGTAGAGTAGTCGGTCTGGGCTGCTGCTCTCCATTGCTGTAATGGGTCATACATGTTTCTGCTTTACATGGTGTTTGGTTGCAGGTTTCGTTTTTTGGGTTATTCATTGTCAAATCTTTAAAAACCAAAGCCATACTGCGACATTTTAGTAGCCTATCTAGGACTGTGGCATGTGTCTGAACACTCCCTCCTCTGTGCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGAACACACTCCCTCCTCTGTGCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtaCTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGaacactctccctcctctgtgcTCTGTAAACAGGACTGTGGCATGTGTCTGAACACTCTCCCTCCGCTGTGCTCTGTAAACGGGACTGTGACATGTGCCTGAACACTCTCCCTCAGCTGGGACACACAGAAAGCAGCGCAATTGATGTTGAATTCACAAAATGTGAGCGCATCAGGCTGTAATTTCATGAAGTAGATGACTCAACTGTTGACTCTGATTTATACACATTATGCTCATGTGTCCTATTGTCCTTCAACGTGTTCTGTAATGGCCTGTTAGAACTGAAACTTGGCATGGccatttaacctttaacctttcgGCCTGGTAGAACATTCGGTCTGTGCCGTAGGTGCTGTGCGCTGGctggctcgtgtgtgtgtgtgtgtgtgtgtgtttggtgcgcAGCATGTTGGCAGTGCTTGCTGGGACTTGTAGTGCATCGCATCTCAGCCTGTACGGTAGCAGGCCAAAATGAATTGAGAACCCAAATCAATGGGCAGGCTGGATAGATTTGTATCGTAGTCCCGGATTCGGCCCGCTGGCCTTGTGTTTTCCATGTGTTGTAAACTGTCGCGAAATAGCCATTAATGATCCAAACGGTTACATCATCAGGCCTGGGCTGTATCTAATGCCCCTTTCTGGGCCTTCTGAACTGTCCAGAATAGACCCATACGGATCCAAACGGTTACATCATCAGGCCTCGGCTGTATCTAATGCCCCTTTCTGGGCCTTCTGAACTGTCCAGAATAGACCCATACGGATCCAAACGGTTACATCATCAGGCCTCGGCTGTATCTAATGCACCTTTCTGGGCCTTCTGAACTGTCCAGAAAAGATCCAAACGGTTACATCATCAGGCCTGGGCTGTATCTAATGCACCTTTCTGGGCCTTCTGAACTGTCCAGAAT
>TU3539
GTGGTATTTCTCAAATGTATGCTTTAGTCACAACTACCAAGTCTAGGATGAGTGAACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCAGTTAACTTTATGAGCACAACATGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCTGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCACAACAGGATTTGGGTATGAGGTAGCCCTAAAGGCCTAATCAATAGTGTCCGGTTAACTTTATGAGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981138.1 False 2117 mRNA 0.48 2 3291184 3294573
XR_005052263.1 False 3324 mRNA 0.46 2 3291184 3294574
TU3539 True 699 lncRNA 0.37 3 3293541 3294574

Neighbor

gene id symbol gene type direction distance location
LOC118966169 NA coding downstream 287190 3002309 ~ 3003994 (-)
LOC110523943 LOC106573992 coding downstream 476107 2636662 ~ 2815077 (-)
LOC110531934 LOC106574222 coding downstream 672601 2616583 ~ 2618583 (-)
LOC118964912 NA coding downstream 813994 2462283 ~ 2477190 (-)
tp63 NA coding downstream 903879 2259231 ~ 2387305 (-)
smx5 LSM2 coding upstream 337764 3632307 ~ 3640949 (-)
inpp5d inpp5d coding upstream 353263 3647837 ~ 3700485 (-)
LOC118965007 NA coding upstream 413475 3708049 ~ 3720457 (-)
amotl2a LOC106591579 coding upstream 457852 3752426 ~ 3766194 (-)
cep63 cep63 coding upstream 530659 3825233 ~ 3847645 (-)
G2707 NA non-coding downstream 16147 3272092 ~ 3275037 (-)
G2705 NA non-coding downstream 25453 3265363 ~ 3265731 (-)
G2683 NA non-coding downstream 80583 3208531 ~ 3210601 (-)
G2676 NA non-coding downstream 110630 3177893 ~ 3180554 (-)
G2650 NA non-coding downstream 193199 3097117 ~ 3097985 (-)
G2718 NA non-coding upstream 209 3294783 ~ 3295721 (-)
G2723 NA non-coding upstream 14578 3309152 ~ 3309572 (-)
G2728 NA non-coding upstream 23223 3317797 ~ 3320269 (-)
G2729 NA non-coding upstream 42821 3337395 ~ 3337805 (-)
G2731 NA non-coding upstream 45789 3340363 ~ 3340962 (-)
G2605 NA other downstream 312268 2978615 ~ 2978916 (-)
G2192 NA other downstream 547610 2742887 ~ 2743574 (-)
G1954 NA other downstream 756671 2534030 ~ 2534513 (-)
G1788 NA other downstream 1194060 2092410 ~ 2097715 (-)
G1651 LOC106574119 other downstream 1530754 1753245 ~ 1760430 (-)
G2730 NA other upstream 45139 3339713 ~ 3341868 (-)
G2749 NA other upstream 90732 3385306 ~ 3388215 (-)
G2772 NA other upstream 147764 3442338 ~ 3444099 (-)
LOC110524598 LOC106574123 other upstream 787589 4040460 ~ 4121533 (-)

Expression


Co-expression Network