LOC118965007


Basic Information

Item Value
gene id LOC118965007
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 3708049 ~ 3720457 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052400.1
GATCAACTAGACAGGCATCAGcttcctggatgtggagaggagacTGCTGCAGCTCTCCTACCCAGAGGTCACTAGGAGTCAACACCATGAGgGGAGGGCAAGACGTTTGGCCAGTCTGTGACTCTCCGGACTCTGAAGGGAGACTTCTCTCTGAAATGCGGTGATGACTGGGAACATAGCAGAGCTGGTGCATATGTTTCTGGGAGGACTGAGGGAACGCTCTCAGTATGCTGTGGCCCTGCAGGAAGTCAACCAAAataaccCTACGTTTCTGAGCTTTAAGAAAGGAGAGCTGATAGTCCTCATTAAAGACGATGAGCTGACTGTCGGCCGCGGCTGGATCAAGGGCAAGAACGAACGCACCAGTAAGACAGGGGCGGTACCCACCGACGCTATCCTGGTCCTGCCCACTCTCACTAAACCCACCAATGAATTCATGACGGCACGCTGTAATTTGGActttacgcattcctgcgcctgtctcccgatcctTCATACCAACGTTACATCACGGTTGGTTCCATATCCTTAAAGGTTGAAGAGCCCAGGATCACAGACCCCACCTCTTCTCTCGTGGTTGGATCACAGAATCACCTCTTCTCTCGTGGTTGGATCACAGACTCACCCCTTCTCTCATGGTTGGATGGTGGGCCTGATTGGCATGCACAGTATTTGACAGACTGTTTTCAGAGATGTTTCAGTTCCTTTTCTTGCCCGTCATTTACCTATCCTGGGTGGTTTTAATACTGTTTTCAGATATGTGTTCCTTCCTTTCCATGACCTGTGTGTACCTATCCTGAAGTACATGGGAGTCTACCCCACCAGGCAGATACAGAGTCCTCTAGAGTTGACAGACCAGATCTTTGACCCAGCCACCAAGGACGAGGCCCTGAGAGACAAGATCTACTGTCAGATCATGAAACAAAtgaccagcaacaacaacagGATAGAGCCCAGGAAGCTGCCTCCTCACCAGGTGGAGATAGATGCCATCCAGCAGAATTCCACTCAGATCTTCCCCAAGGTCCACTTCCACAACGACACAGAAGAGCACTAGGATCAGGGACCTCTGTCAGACCATCTCCACCAAACTCCAGCTGGTCTCATCTGACGGCTTCAGCATCTTTGTCAAAACACCCGACAAGGTTTGtcatcaatacaacatcacaTGGCATAGTAATTATCTGGTGGGGGTTTATATAGCTCTTAGCCCCCTCTGTAGATGCCTACTGGACAACATTTATTTGTATTGCTTCTaaaatatttttaatacatttttatcttattaacactttgttctagctagctatttgtgtc
>XM_036981728.1
GATCAACTAGACAGGCATCAGcttcctggatgtggagaggagacTGCTGCAGCTCTCCTACCCAGAGGTCACTAGGAGTCAACACCATGAGgGGAGGGCAAGACGTTTGGCCAGTCTGTGACTCTCCGGACTCTGAAGGGAGACTTCTCTCTGAAATGCGGTGATGACTGGGAACATAGCAGAGCTGGTGCATATGTTTCTGGGAGGACTGAGGGAACGCTCTCAGTATGCTGTGGCCCTGCAGGAAGTCAACCAAAataaccCTACGTTTCTGAGCTTTAAGAAAGGAGAGCTGATAGTCCTCATTAAAGACGATGAGCTGACTGTCGGCCGCGGCTGGATCAAGGGCAAGAACGAACGCACCAGTAAGACAGGGGCGGTACCCACCGACGCTATCCTGGTCCTGCCCACTCTCACTAAACCCACCAATGAATTCATGACGGCACGCTGTAATTTGGActttacgcattcctgcgcctgtctcccgatcctTCATACCAACGTTACATCACGGTTGGTTCCATATCCTTAAAGGTTGAAGAGCCCAGGATCACAGACCCCACCTCTTCTCTCGTGGTTGGATCACAGAATCACCTCTTCTCTCGTGGTTGGATCACAGACTCACCCCTTCTCTCATGGTTGGATGGTGGGCCTGATTGGCATGCACAGTATTTGACAGACTGTTTTCAGAGATGTTTCAGTTCCTTTTCTTGCCCGTCATTTACCTATCCTGGGTGGTTTTAATACTGTTTTCAGATATGTGTTCCTTCCTTTCCATGACCTGTGTGTACCTATCCTGAAGTACATGGGAGTCTACCCCACCAGGCAGATACAGAGTCCTCTAGAGTTGACAGACCAGATCTTTGACCCAGCCACCAAGGACGAGGCCCTGAGAGACAAGATCTACTGTCAGATCATGAAACAAAtgaccagcaacaacaacaggtaggctTTAAGGGCCCGTTTCCCAGACGCAAATTAGATGAAGCGTAATCCATTGATCAAGTGGTTATAGCCTACTGTTACTGGTAGATATTAGTGACATAAGCACTATATTACTACGATATTGTGATTATTACCCCCAGCAGCACTGTCGTGGCACAGTTTCTCTGGACCCCTGCAAATGTCggagttacccc

Function

NR:

description
PREDICTED: unconventional myosin-VIIa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052400.1 False 1317 mRNA 0.49 6 3708049 3720457
XM_036981728.1 True 1139 mRNA 0.50 4 3715804 3720457

Neighbor

gene id symbol gene type direction distance location
inpp5d inpp5d coding downstream 7564 3647837 ~ 3700485 (-)
smx5 LSM2 coding downstream 67100 3632307 ~ 3640949 (-)
LOC110518923 LOC105011323 coding downstream 183766 3022610 ~ 3524283 (-)
LOC118964935 NA coding downstream 413475 3291184 ~ 3294574 (-)
LOC118966169 NA coding downstream 704055 3002309 ~ 3003994 (-)
amotl2a LOC106591579 coding upstream 31969 3752426 ~ 3766194 (-)
cep63 cep63 coding upstream 104776 3825233 ~ 3847645 (-)
LOC110524898 LOC107696768 coding upstream 154381 3874838 ~ 4037960 (-)
LOC110524598 LOC106574123 coding upstream 320003 4040460 ~ 4121533 (-)
LOC110524778 LOC106574121 coding upstream 407949 4128406 ~ 4257029 (-)
G2889 NA non-coding downstream 16417 3690974 ~ 3691632 (-)
G2876 NA non-coding downstream 54490 3653058 ~ 3653559 (-)
G2858 NA non-coding downstream 90518 3602744 ~ 3617531 (-)
G2865 NA non-coding downstream 92254 3615110 ~ 3615795 (-)
G2799 NA non-coding downstream 105716 3599642 ~ 3602333 (-)
G2909 NA non-coding upstream 11849 3732306 ~ 3743202 (-)
G2921 NA non-coding upstream 59832 3780289 ~ 3780701 (-)
G2932 NA non-coding upstream 89269 3809726 ~ 3809950 (-)
G2934 NA non-coding upstream 90133 3810590 ~ 3810818 (-)
G2936 NA non-coding upstream 97950 3818407 ~ 3818983 (-)
G2772 NA other downstream 263950 3442338 ~ 3444099 (-)
G2749 NA other downstream 319834 3385306 ~ 3388215 (-)
G2730 NA other downstream 366181 3339713 ~ 3341868 (-)
G2605 NA other downstream 729133 2978615 ~ 2978916 (-)
G3152 NA other upstream 403819 4124276 ~ 4124695 (-)
G3291 NA other upstream 532730 4253187 ~ 4263613 (-)
LOC110486761 kif1a other upstream 1030949 4751406 ~ 4921256 (-)
G3862 NA other upstream 1228226 4948683 ~ 4957072 (-)

Expression


Co-expression Network