LOC110524598 (LOC106574123)


Basic Information

Item Value
gene id LOC110524598
gene name LOC106574123
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4040460 ~ 4121533 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982329.1
CTCATTTGAGACTCACCAGAGTAGAACTgtgggacaaagagagagagagagagagagagatattacccCCTCTGACTCCAACACGGAGAGACTCACTCATTTCCCCCACTCTCAACAGCTGAGTTCAACGCgactggactctctctctctcttctctggatACCTTTACTCTTCATAGAAAATGGAGATTTATGTCAAGGATATGAAGAAACCAAGATCAGTGTTCAGCAATATAAAGATGTTTGTGCTGTGTCATGGCCTGCTGCAGCTCACCCAGCTCCTGTACAGCTCCTACTTTAAGAGCACCATAACCACCATCGAGAGACGCTTTGGCCTCAGCAGCTTCTCCTCCGGTACCGTCTCCTCTCTGCACGAGGTGGGGAACACAGTTCTGATAGTGTTTGTGAGTTACCTGGGCAGCAGGGTCCATCGGCCTCGTCTGATTGGACTGGGTGGTCTGCTGATGTCCATCAGCGCACTGATCCTGGCCCTACCTCACTTCCTGTCCCAGCCCTATGAGTTTGACTCTGTCATACATGATCGCCAAGACCTGTGTTCACTCCAAGGTACCTCCAACATGACAGAGACCTGTGGGAAGACAGAGATCAAGCGTATAGCAGACACCAACAACTTGTGGCTGCTCATGGCTATAGCTCAGCTGCTGTTCGGAGTGGGGTCTGTTCCCATACAACCCTTTGGTATCTCTTATGTGGATGACTTTGCCGGACGAGGCAACTCCCCCCTCTACATAGCCATCCtgtttgctgtgtctgtgtttggACCTGCCTTTGGCTTCCTGCTGGGCTCCGTCATGCTGAGGATCTATGTGGACGTGGACAGAACCGGCTCAGTCACCAACGCTGAGCTGGCCCCTACAGACCCTCGCTGGGTGGGTGCGTGGTGGATGGGCCTCCTCGTCTCCTCTGCCAGCCTAGCCCTGACCTCCACCCCATACTTCCTCTTTCCTCGCAGCATGCCACTGGAAGGCAATGTAAGTGGAACTGACATTATGAATGAAAGCTCCGAAAAGCCTGAGATCTCACTGCTTGATTTCCTTAAGAtGTTCCCCAGGCTGTTTGTTCGTCTGCTCCTCAGTCCTCTGTTCCTGCTGTTGGTTCTGTCTCAGTGCTGTTTCTCTTCAGTCATCGCTGGCCTCGCCACCTTCCTCAACAAATTCCTGGAGAGACAGTACAGCACGACTGCCGCTTACAGCAGCCTCCTCATAGGTGCGGTGAACCTTCCTTCGGTTGCCGTGGGGATGCTGGTGGGTGGGGTCATCATGAAGAGGATGGGTCTCTCTCTTAAGGCCATCCCTCGTTTCTCTGTCGCCATGCTGTccatctctgtcctcctcctcatccccctcttcttcATGGGATGTCCCACACAGAGGGTGGAAGAGGTCAACTATGGATTCCAAGGGTCTCTGGCCAATTGTTATTCCAACTGCTCCTGCCCCGCTAACGCCTTCAACCCAGTGTGTGGATCTGACAACACTGagtacctgtctccctgccatGCAGGTTGCAAAGACTACACCAAAGACCCCAACAACAAATTCAGAGTTCTGGAGTACACAGACTGTATCTGTACAGCTCACAGCCAGGGTAGTGGTGGGGGTACTGCCCGCCCCGGCCCCTGCCCCAACCAATGTCCTCACTTCCTGCTTCCTGTCATGTTCCTCATCTCTCTGGCCGCGATGATCGCCTCTCTAACACACAATCCCATCTATATGATGGTCCTCAGAACTGTTCCCCATGAAGAGAAATCTTTTGCCATCGGAGTCCAGTTTCTGCTCATGAGAGTGCTTGCCTGGTTACCAGCCCCAGCCCTGTTCGGCATGACCATCGACAGCTCCTGTATTTGGTGGAAACATGCCTGTGGCAACCAGCTGGGCTGTGGTTACTATGACAATAACACCCTGAGGAACAGATACCTGGGTCTGCAGGTGGGCTTCAAGGTGATGGGGATCTTCCTGCTGGGGCTGGCTGGATGGAAGGTCCAGAGGACCAGGGAGTACAACCTGGAAAAACGGCCTGATGGACCACTGTGATCCTGGGATACGACTGCCCGCTGGGCTCCTTAACTCCTTCCTtcctgccccctccct
>XM_036982410.1
AGCTCATTTGAGACTCACCAGAGTAGAACTgtgggacaaagagagagagagagagagagagatattacccCCTCTGACTCCAACACGGAGAGACTCACTCATTTCCCCCACTCTCAACAGCTGAGTTCAACGCgactggactctctctctctcttctctggatACCTTTACTCTTCATAGAAAATGGAGATTTATGTCAAGGATATGAAGAAACCAAGATCAGTGTTCAGCAATATAAAGATGTTTGTGCTGTGTCATGGCCTGCTGCAGCTCACCCAGCTCCTGTACAGCTCCTACTTTAAGAGCACCATAACCACCATCGAGAGACGCTTTGGCCTCAGCAGCTTCTCCTCCGGTACCGTCTCCTCTCTGCACGAGGTGGGGAACACAGTTCTGATAGTGTTTGTGAGTTACCTGGGCAGCAGGGTCCATCGGCCTCGTCTGATTGGACTGGGTGGTCTGCTGATGTCCATCAGCGCACTGATCCTGGCCCTACCTCACTTCCTGTCCCAGCCCTATGAGTTTGACTCTGTCATACATGATCGCCAAGACCTGTGTTCACTCCAAGGTACCTCCAACATGACAGAGACCTGTGGGAAGACAGAGATCAAGCGTATAGCAGACACCAACAACTTGTGGCTGCTCATGGCTATAGCTCAGCTGCTGTTCGGAGTGGGGTCTGTTCCCATACAACCCTTTGGTATCTCTTATGTGGATGACTTTGCCGGACGAGGCAACTCCCCCCTCTACATAGCCATCCtgtttgctgtgtctgtgtttggACCTGCCTTTGGCTTCCTGCTGGGCTCCGTCATGCTGAGGATCTATGTGGACGTGGACAGAACCGGCTCAGTCACCAACGCTGAGCTGGCCCCTACAGACCCTCGCTGGGTGGGTGCGTGGTGGATGGGCCTCCTCGTCTCCTCTGCCAGCCTAGCCCTGACCTCCACCCCATACTTCCTCTTTCCTCGCAGCATGCCACTGGAAGGCAATGTAAGTGGAACTGACATTATGAATGAAAGCTCCGAAAAGCCTGAGATCTCACTGCTTGATTTCCTTAAGAtGTTCCCCAGGCTGTTTGTTCGTCTGCTCCTCAGTCCTCTGTTCCTGCTGTTGGTTCTGTCTCAGTGCTGTTTCTCTTCAGTCATCGCTGGCCTCGCCACCTTCCTCAACAAATTCCTGGAGAGACAGTACAGCACGACTGCCGCTTACAGCAGCCTCCTCATAGGTGCGGTGAACCTTCCTTCGGTTGCCGTGGGGATGCTGGTGGGTGGGGTCATCATGAAGAGGATGGGTCTCTCTCTTAAGGCCATCCCTCGTTTCTCTGTCGCCATGCTGTccatctctgtcctcctcctcatccccctcttcttcATGGGATGTCCCACACAGAGGGTGGAAGAGGTCAACTATGGATTCCAAGGGTCTCTGGCCAATTGTTATTCCAACTGCTCCTGCCCCGCTAACGCCTTCAACCCAGTGTGTGGATCTGACAACACTGagtacctgtctccctgccatGCAGGTTGCAAAGACTACACCAAAGACCCCAACAACAAATTCAGAGTTCTGGAGTACACAGACTGTATCTGTACAGCTCACAGCCAGGGTAGTGGTGGGGGTACTGCCCGCCCCGGCCCCTGCCCCAACCAATGTCCTCACTTCCTGCTTCCTGTCATGTTCCTCATCTCTCTGGCCGCGATGATCGCCTCTCTAACACACAATCCCATCTATATGATGGTCCTCAGAACTGTTCCCCATGAAGAGAAATCTTTTGCCATCGGAGTCCAGTTTCTGCTCATGAGAGTGCTTGCCTGGTTACCAGCCCCAGCCCTGTTCGGCATGACCATCGACAGCTCCTGTATATAATGTTATGTATTGTGTGATTCTCCTCTATTCTAGCCTGGTTACCAGCCCTGTTCAGCATGGCCATCCTCAGCTCCTGTATATAATGTTATGTATTGTGTGATCCTCCTCTATTCTAGCCTGGTTACCAGCCCCAGCCCTGTTCGGCATGACCATCGACAGCTCCTGTATATAATGTTATGTATTGTGTGATTCTCCTCTATTCTAGCCTGGTTACCAGCCCTGTTCAGCATGGCCATCCTCAGCTCCTGTATATAATGTTATGTATTGTGTGATTCTCCTCTATTCTAGCCTGGTTACCAGCCCCAGCCCTGTTCGGCATGACCATCGACAGCTCCTGTATATAATGTTATGTATTGTGTGATCCTCCTCTATTCTAGCCTGGTTACCAGCCTCAGCCCTGTTCGGCATGACCATCCTCAGCTCCTGTATATAATGTTATGTATTG
>XM_036982495.1
AGCTCATTTGAGACTCACCAGAGTAGAACTgtgggacaaagagagagagagagagagagagatattacccCCTCTGACTCCAACACGGAGAGACTCACTCATTTCCCCCACTCTCAACAGCTGAGTTCAACGCgactggactctctctctctcttctctggatACCTTTACTCTTCATAGAAAATGGAGATTTATGTCAAGGATATGAAGAAACCAAGATCAGTGTTCAGCAATATAAAGATGTTTGTGCTGTGTCATGGCCTGCTGCAGCTCACCCAGCTCCTGTACAGCTCCTACTTTAAGAGCACCATAACCACCATCGAGAGACGCTTTGGCCTCAGCAGCTTCTCCTCCGGTACCGTCTCCTCTCTGCACGAGGTGGGGAACACAGTTCTGATAGTGTTTGTGAGTTACCTGGGCAGCAGGGTCCATCGGCCTCGTCTGATTGGACTGGGTGGTCTGCTGATGTCCATCAGCGCACTGATCCTGGCCCTACCTCACTTCCTGTCCCAGCCCTATGAGTTTGACTCTGTCATACATGATCGCCAAGACCTGTGTTCACTCCAAGGTACCTCCAACATGACAGAGACCTGTGGGAAGACAGAGATCAAGCGTATAGCAGACACCAACAACTTGTGGCTGCTCATGGCTATAGCTCAGCTGCTGTTCGGAGTGGGGTCTGTTCCCATACAACCCTTTGGTATCTCTTATGTGGATGACTTTGCCGGACGAGGCAACTCCCCCCTCTACATAGCCATCCtgtttgctgtgtctgtgtttggACCTGCCTTTGGCTTCCTGCTGGGCTCCGTCATGCTGAGGATCTATGTGGACGTGGACAGAACCGGCTCAGTCACCAACGCTGAGCTGGCCCCTACAGACCCTCGCTGGGTGGGTGCGTGGTGGATGGGCCTCCTCGTCTCCTCTGCCAGCCTAGCCCTGACCTCCACCCCATACTTCCTCTTTCCTCGCAGCATGCCACTGGAAGGCAATGTAAGTGGAACTGACATTATGAATGAAAGCTCCGAAAAGCCTGAGATCTCACTGCTTGATTTCCTTAAGAtGTTCCCCAGGCTGTTTGTTCGTCTGCTCCTCAGTCCTCTGTTCCTGCTGTTGGTTCTGTCTCAGTGCTGTTTCTCTTCAGTCATCGCTGGCCTCGCCACCTTCCTCAACAAATTCCTGGAGAGACAGTACAGCACGACTGCCGCTTACAGCAGCCTCCTCATAGGTGCGGTGAACCTTCCTTCGGTTGCCGTGGGGATGCTGGTGGGTGGGGTCATCATGAAGAGGATGGGTCTCTCTCTTAAGGCCATCCCTCGTTTCTCTGTCGCCATGCTGTccatctctgtcctcctcctcatccccctcttcttcATGGGATGTCCCACACAGAGGGTGGAAGAGGTCAACTATGGATTCCAAGGGTCTCTGGCCAATTGTTATTCCAACTGCTCCTGCCCCGCTAACGCCTTCAACCCAGTGTGTGGATCTGACAACACTGagtacctgtctccctgccatGCAGGTTGCAAAGACTACACCAAAGACCCCAACAACAAATTCAGAGTTCTGGAGTACACAGACTGTATCTGTACAGCTCACAGCCAGGGTAGTGGTGGGGGTACTGCCCGCCCCGGCCCCTGCCCCAACCAATGTCCTCACTTCCTGCTTCCTGTCATGTTCCTCATCTCTCTGGCCGCGATGATCGCCTCTCTAACACACAATCCCATCTATATGATGGTCCTCAGAACTGTTCCCCATGAAGAGAAATCTTTTGCCATCGGAGTCCAGTTTCTGCTCATGAGAGTGCTTGCCTGGTTACCAGCCCCAGCCCTGTTCAGCATGGCCATCCTCAGCTCCTGTATATAATGTTATGTATTGTGT
>TU3986
agatattacccCCTCTGACTCCAACACGGAGAGACTCACTCATTTCCCCCACTCTCAACAGCTGAGTTCAACGCgactggactctctctctctcttctctggatACCTTTACTCTTCATAGAAAATGGAGATTTATGTCAAGGATATGAAGAAACCAAGATCAGTGTTCAGCAATATAAAGATGTTTGTGCTGTGTCATGGCCTGCTGCAGCTCACCCAGCTCCTGTACAGCTCCTACTTTAAGAGCACCATAACCACCATCGAGAGACGCTTTGGCCTCAGCAGCTTCTCCTCCGGTACCGTCTCCTCTCTGCACGAGGTGGGGAACACAGTTCTGATAGTGTTTGTGAGTTACCTGGGCAGCAGGGTCCATCGGCCTCGTCTGATTGGACTGGGTGGTCTGCTGATGTCCATCAGCGCACTGATCCTGGCCCTACCTCACTTCCTGTCCCAGCCCTATGAGTTTGACTCTGTCATACATGATCGCCAAGACCTGTGTTCACTCCAAGGTACCTCCAACATGACAGAGACCTGTGGGAAGACAGAGATCAAGCGTATAGCAGACACCAACAACTTGTGGCTGCTCATGGCTATAGCTCAGCTGCTGTTCGGAGTGGGGTCTGTTCCCATACAACCCTTTGGTATCTCTTATGTGGATGACTTTGCCGGACGAGGCAACTCCCCCCTCTACATAGCCATCCtgtttgctgtgtctgtgtttggACCTGCCTTTGGCTTCCTGCTGGGCTCCGTCATGCTGAGGATCTATGTGGACGTGGACAGAACCGGCTCAGtcgcCAATGCTGAGCTGGCCCCTACAGACCCTCGCTGGGTGGGTGCGTGGTGGATGGGCCTCCTCGTCTCCTCTGCCAGCctagccc

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 2A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982329.1 False 2110 mRNA 0.53 14 4040460 4121531
XM_036982410.1 False 2314 mRNA 0.52 13 4041067 4121533
XM_036982495.1 False 1884 mRNA 0.53 13 4041669 4121533
TU3986 True 881 TUCP 0.47 6 4082163 4121474

Neighbor

gene id symbol gene type direction distance location
LOC110524898 LOC107696768 coding downstream 2500 3874838 ~ 4037960 (-)
cep63 cep63 coding downstream 192815 3825233 ~ 3847645 (-)
amotl2a LOC106591579 coding downstream 274266 3752426 ~ 3766194 (-)
LOC118965007 NA coding downstream 320003 3708049 ~ 3720457 (-)
inpp5d inpp5d coding downstream 339975 3647837 ~ 3700485 (-)
LOC110524778 LOC106574121 coding upstream 6873 4128406 ~ 4257029 (-)
LOC110524992 sned1 coding upstream 139984 4261517 ~ 4415138 (-)
crocc2 LOC106574213 coding upstream 319909 4441442 ~ 4685402 (-)
klhl30 klhl30 coding upstream 568692 4690225 ~ 4703383 (-)
LOC110486761 kif1a coding upstream 634211 4751406 ~ 4921256 (-)
G3124 NA non-coding downstream 17751 4020652 ~ 4022709 (-)
G3106 NA non-coding downstream 79310 3960892 ~ 3961150 (-)
G3083 NA non-coding downstream 133762 3903927 ~ 3906698 (-)
G3078 NA non-coding downstream 145992 3894080 ~ 3894468 (-)
G3070 NA non-coding downstream 157537 3880895 ~ 3882923 (-)
G3253 NA non-coding upstream 31086 4152619 ~ 4154560 (-)
G3262 NA non-coding upstream 53343 4174876 ~ 4183734 (-)
G3266 NA non-coding upstream 62322 4183855 ~ 4185475 (-)
G3298 NA non-coding upstream 156100 4277633 ~ 4277839 (-)
G3299 NA non-coding upstream 156733 4278266 ~ 4279193 (-)
smx5 LSM2 other downstream 399567 3632307 ~ 3640949 (-)
G2772 NA other downstream 596361 3442338 ~ 3444099 (-)
G2749 NA other downstream 652245 3385306 ~ 3388215 (-)
G2730 NA other downstream 698592 3339713 ~ 3341868 (-)
G2605 NA other downstream 1061544 2978615 ~ 2978916 (-)
G3152 NA other upstream 2743 4124276 ~ 4124695 (-)
G3291 NA other upstream 131654 4253187 ~ 4263613 (-)
G3862 NA other upstream 827150 4948683 ~ 4957072 (-)
G4804 NA other upstream 1895289 6016822 ~ 6018076 (-)

Expression


Co-expression Network