Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110527749 |
| gene name | armc9 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 6559067 ~ 6651795 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| armc9 | Acts upstream of or within cilium assembly. Predicted to be located in cilium. Predicted to be active in centriole; ciliary basal body; and ciliary tip. Is expressed in central nervous system and retina. |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005052837.1 | False | 4982 | mRNA | 0.48 | 27 | 6559067 | 6651795 |
| XM_036985001.1 | False | 5017 | mRNA | 0.48 | 26 | 6559068 | 6651795 |
| XR_005052830.1 | False | 4985 | mRNA | 0.48 | 27 | 6559068 | 6651795 |
| XR_005052839.1 | False | 4948 | mRNA | 0.48 | 26 | 6559069 | 6651795 |
| TU6676 | True | 1582 | lncRNA | 0.47 | 2 | 6650165 | 6651767 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526525 | LOC106613452 | coding | upstream | 791374 | 5664171 ~ 5767693 (+) |
| agxta | LOC105025628 | coding | upstream | 1601981 | 4948727 ~ 4957086 (+) |
| im:7152348 | LOC106573986 | coding | upstream | 2706058 | 3848517 ~ 3853009 (+) |
| trnap-ugg | NA | coding | upstream | 2711108 | 3847888 ~ 3847959 (+) |
| trnap-cgg | NA | coding | upstream | 2711373 | 3847623 ~ 3847694 (+) |
| b3gnt7 | b3gnt7 | coding | downstream | 32304 | 6684099 ~ 6700304 (+) |
| alpi.1 | LOC106574189 | coding | downstream | 376755 | 7028550 ~ 7056518 (+) |
| alpi.2 | LOC106574193 | coding | downstream | 412573 | 7064368 ~ 7094220 (+) |
| ankle1 | LOC106574192 | coding | downstream | 444504 | 7096299 ~ 7107509 (+) |
| LOC118966183 | NA | coding | downstream | 678657 | 7330452 ~ 7331042 (+) |
| G5273 | NA | non-coding | upstream | 43324 | 6515106 ~ 6515743 (+) |
| G5266 | NA | non-coding | upstream | 48940 | 6509927 ~ 6510127 (+) |
| G5264 | NA | non-coding | upstream | 52879 | 6505988 ~ 6506188 (+) |
| G5255 | NA | non-coding | upstream | 60346 | 6498421 ~ 6498721 (+) |
| G5253 | NA | non-coding | upstream | 62689 | 6495793 ~ 6496378 (+) |
| G5365 | ncl | non-coding | downstream | 90676 | 6742471 ~ 6747632 (+) |
| G5366 | NA | non-coding | downstream | 96532 | 6748327 ~ 6748866 (+) |
| G5567 | NA | non-coding | downstream | 140961 | 6792756 ~ 6809277 (+) |
| G5580 | NA | non-coding | downstream | 158249 | 6810044 ~ 6810274 (+) |
| G5583 | NA | non-coding | downstream | 160713 | 6812508 ~ 6812775 (+) |
| G5276 | NA | other | upstream | 40878 | 6517482 ~ 6518189 (+) |
| G3597 | NA | other | upstream | 1702002 | 4856525 ~ 4857065 (+) |
| G3596 | NA | other | upstream | 1702819 | 4854521 ~ 4856248 (+) |
| G3351 | NA | other | upstream | 2117159 | 4439966 ~ 4441908 (+) |
| G3234 | NA | other | upstream | 2159623 | 4398904 ~ 4399444 (+) |
| G5581 | NA | other | downstream | 159199 | 6810994 ~ 6811621 (+) |
| G6434 | NA | other | downstream | 1073251 | 7725046 ~ 7725609 (+) |
| G6518 | NA | other | downstream | 1233596 | 7885391 ~ 7885907 (+) |
| G6807 | NA | other | downstream | 1384822 | 8036617 ~ 8037154 (+) |
| LOC110501328 | LOC106574178 | other | downstream | 1577502 | 8229189 ~ 8231566 (+) |
| G5324 | NA | non-coding | upstream | 20386 | 6623804 ~ 6629779 (+) |
| G5304 | NA | non-coding | upstream | 70392 | 6578604 ~ 6579773 (+) |
