LOC110528450 (LOC106574163)


Basic Information

Item Value
gene id LOC110528450
gene name LOC106574163
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7414613 ~ 7550394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036985694.1
GATAGTTCAACAGGCAGAGTTCACTCGACTTCAGAGCAAGTGGACAGTAACTTTTTCCTTTTCTCTTTAACTCCTGAAGTCTCAGCCCTCTTCATTGCTCTGATTGCCCCAATTACTACTCACAGAATGGAATAGGTTAAGAGATCGAGATTAAGGGTCGGTGTCGTAGAGGATCGATCAAACCAGAGCCTTGTTTTCTCTGTGGAGCTGTGGATTGGCATGTCTTCCTTCAGCCGTGACAGTGAAAGTGATCAGTGTTGCTCTACAGAGGACTTGACTGGTGCAGGTGGTCAGCCGGACGGAGCTGAgtctcccgctcagcccagtggAGCTGTCATGCTGCCCAAAGGCGACACGGAATCTCTAGGACTCGTTCGATCGCATGGAGAACAGGGACACATGCCAAGAAATATGCAAGCCCCCCACTATAAAATGATGAACTACTCATATGATGAAGACTTGGATGAGATGTGTCCGGTGTGTGGAGACAAGGTTTCTGGATACCATTACGGGCTCCTCACATGTGAAAGCTGCAAGGGTTTCTTCAAGCGCACGGTTCAGAATAACAAACGGTACACATGCATAGAGAACCAGACATGTGCCATCGACAAGACACAAAGAAAACGCTGCCCTTATTGCCGCTTTCAGAAGTGCCTCACTGTTGGCATGAAGCTGGAAGctgtGAGGGCGGACCGCATGCGCGGCGGCCGCAACAAGTTCGGCCCCATGTACAAGCGCGACCGGGCCCTCAAGCAGCAGAAGAAAGCGCTGATCCGCGCCAACGGCCTGAAGATCGAGTCCATGACCCAGGTGATGCAGGCGGTGCCCACCGACCTCACCATCTCCTCGGCCATCCAGCACATCCACCAGGCCGCCTCCAAGGGCCTGCCGCTCAGCCACCACGGCCTCCCGCACCACGCCGCCCTGCCCCACACAGACTACGATCGCAGCCCCTTCGTGACGTCTCCCATCAGCATGGCCATGCCCCCCCACACTGGTTCCCTCCAGGGCTACCAGGCAGCCTACGGCCACTTCCAGAGCACCCGCACCATCAAGTCCGAGTACCCGGACCCGTACAGCAGCTCGCCCGAGTCCATCATGGGTTACAACCCGTACATGGACGTGTACCAGACGGGCTCGCCGCCCAGCTTCCCACACCTCATCGTGGAGCTGCTGAAGTGCGAACCTGATGAGCCCCAGGTGCAGACCAAGATCCTGGCCTACCTGCAGCAGGAGCAGGCCAGCCGGGGGAAACACGACAAACTCAACACGTTCGGCCTTATGTGCAAGATGGCCGACCAGACGCTTTTCTCCATCGTGGAGTGGGCCCGGAGCAGCATCTTCTTCCGCGAGCTCAAGGTGGACGACCAAATGAAGCTCCTCCAGAACTGTTGGAGCGAGCTCCTCATCCTCGACCACATTTTCCGTCAGGTGATGCACGCCAAAGAGGGCTCCATCCTATTGGTCACCGGGCAACAGGTGGATTATGCTGTAATTGCCTCCCAAGCCGGAGCTTCTCTAAACAACCTGATGAGCCACGCTCAGGAGCTGGTGGGCAAGCTGCGCTCCCTGCAGCTGGACCAGAGGGAGTTCGTCTGCCTCAAGTTCCTTGTTCTGTTCAGCTTGGACGTGAAGAACCTGGAGAACTTCCACCTGGTGGAGAGCGTCCAGGAACAAGTGAACGCGGTGCTGCTGGACTACGTCATGTGCAACTAcccccagcagacagacaggtttggCCAGCTGCTCCTGCGGCTGCCTGAGATCCGGGCCATCAGCCTCCAGGCCGAGGAGTACCTGTACTACAAGCACCTGAACGGAGACGTGCCCTGCAACAACCTGCTCATCGAGATGCTACACGCCAAGAGAGCCTGATGAGACTTCAGATGGGATCCTGATCATTTGGCTGAAACCGACTCAGAACAGACTCTGTTTTGTTGGTTGAGACCCAAGAAACCGACCCAGAACAGACTCCTCCCATGTTAAAGTTAGACTGAGTGATTCTGGGGCAGGAGGCATCCGTTCTTCTCATTTATCGTAACGATCAACCATCCTGGCACTCACACACAGGCAAAAGAACATGCAGAAATGGACACCCACACTTACACATGCTGTGCACACACATACGCGCGCGcatacacacgaacacacacataaaaacacatttaGGCACTCacacgcgcgtgcacacacaaatatacacacattaaggcacacactcacacgttCAAATTCATACAATATgcatatatattacacacacacacacacagatgcttcTGGAGCTCTGGGTAAAGCTTccaaagacagagagaaacagctgAAATTCTTGAGAACTGTCTATTCGTCTCATGGGACATGGACGATACCTTTTGTCTGCTTTGAATAAAAACACAAACCATCAAGGTGATACAAGGACCAACGGACTGTAACTGAAGGAACAAAACCAATGAGTATTGTAAAAACCTCTCCCactgttaacctctctagggtatgtgagACGCTaacgtcccatctggccaacatcctgtGAGGTTGCaaaaaactacaaaaccaacaaaaaaaaaacgacttcctgaatggat

Function

NR:

description
PREDICTED: nuclear receptor subfamily 5 group A member 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08027 NR5A2, FTF; nuclear receptor subfamily 5 group A member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036985694.1 True 2585 mRNA 0.53 8 7414613 7550394

Neighbor

gene id symbol gene type direction distance location
LOC118966183 NA coding upstream 83571 7330452 ~ 7331042 (+)
ankle1 LOC106574192 coding upstream 307104 7096299 ~ 7107509 (+)
alpi.2 LOC106574193 coding upstream 320393 7064368 ~ 7094220 (+)
alpi.1 LOC106574189 coding upstream 358095 7028550 ~ 7056518 (+)
b3gnt7 b3gnt7 coding upstream 714309 6684099 ~ 6700304 (+)
LOC110528753 LOC106574165 coding downstream 191168 7741562 ~ 7839951 (+)
LOC110528839 LOC106574168 coding downstream 290286 7840680 ~ 7882886 (+)
LOC110528925 hykk coding downstream 350367 7900761 ~ 7935217 (+)
LOC118966768 NA coding downstream 402399 7952793 ~ 7952888 (+)
nmur1a LOC106574171 coding downstream 498601 8048995 ~ 8085970 (+)
G5943 NA non-coding upstream 130019 7283664 ~ 7284594 (+)
G5904 NA non-coding upstream 220196 7192444 ~ 7194417 (+)
G5892 NA non-coding upstream 238341 7175802 ~ 7176272 (+)
G5883 NA non-coding upstream 254342 7159121 ~ 7160271 (+)
G5882 NA non-coding upstream 256192 7158156 ~ 7158421 (+)
G5986 NA non-coding downstream 1955 7552349 ~ 7553098 (+)
G6426 NA non-coding downstream 145886 7696280 ~ 7696531 (+)
G6435 NA non-coding downstream 168514 7718908 ~ 7720218 (+)
G6445 NA non-coding downstream 189231 7739625 ~ 7739824 (+)
G5581 NA other upstream 602992 6810994 ~ 6811621 (+)
G5276 NA other upstream 896424 6517482 ~ 6518189 (+)
G3597 NA other upstream 2557548 4856525 ~ 4857065 (+)
G3596 NA other upstream 2558365 4854521 ~ 4856248 (+)
G3351 NA other upstream 2972705 4439966 ~ 4441908 (+)
G6434 NA other downstream 174652 7725046 ~ 7725609 (+)
G6518 NA other downstream 334997 7885391 ~ 7885907 (+)
G6807 NA other downstream 486223 8036617 ~ 8037154 (+)
LOC110501328 LOC106574178 other downstream 678903 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 other downstream 704748 8255142 ~ 8271732 (+)

Expression


Co-expression Network