Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110528450 |
| gene name | LOC106574163 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 7414613 ~ 7550394 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: nuclear receptor subfamily 5 group A member 2-like |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043401 | steroid hormone mediated signaling pathway | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K08027 | NR5A2, FTF; nuclear receptor subfamily 5 group A member 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036985694.1 | True | 2585 | mRNA | 0.53 | 8 | 7414613 | 7550394 |
7,360,000
7,380,000
7,400,000
7,420,000
7,440,000
7,460,000
7,480,000
7,500,000
7,520,000
7,540,000
7,560,000
7,580,000
7,600,000
7,620,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118966183 | NA | coding | upstream | 83571 | 7330452 ~ 7331042 (+) |
| ankle1 | LOC106574192 | coding | upstream | 307104 | 7096299 ~ 7107509 (+) |
| alpi.2 | LOC106574193 | coding | upstream | 320393 | 7064368 ~ 7094220 (+) |
| alpi.1 | LOC106574189 | coding | upstream | 358095 | 7028550 ~ 7056518 (+) |
| b3gnt7 | b3gnt7 | coding | upstream | 714309 | 6684099 ~ 6700304 (+) |
| LOC110528753 | LOC106574165 | coding | downstream | 191168 | 7741562 ~ 7839951 (+) |
| LOC110528839 | LOC106574168 | coding | downstream | 290286 | 7840680 ~ 7882886 (+) |
| LOC110528925 | hykk | coding | downstream | 350367 | 7900761 ~ 7935217 (+) |
| LOC118966768 | NA | coding | downstream | 402399 | 7952793 ~ 7952888 (+) |
| nmur1a | LOC106574171 | coding | downstream | 498601 | 8048995 ~ 8085970 (+) |
| G5943 | NA | non-coding | upstream | 130019 | 7283664 ~ 7284594 (+) |
| G5904 | NA | non-coding | upstream | 220196 | 7192444 ~ 7194417 (+) |
| G5892 | NA | non-coding | upstream | 238341 | 7175802 ~ 7176272 (+) |
| G5883 | NA | non-coding | upstream | 254342 | 7159121 ~ 7160271 (+) |
| G5882 | NA | non-coding | upstream | 256192 | 7158156 ~ 7158421 (+) |
| G5986 | NA | non-coding | downstream | 1955 | 7552349 ~ 7553098 (+) |
| G6426 | NA | non-coding | downstream | 145886 | 7696280 ~ 7696531 (+) |
| G6435 | NA | non-coding | downstream | 168514 | 7718908 ~ 7720218 (+) |
| G6445 | NA | non-coding | downstream | 189231 | 7739625 ~ 7739824 (+) |
| G5581 | NA | other | upstream | 602992 | 6810994 ~ 6811621 (+) |
| G5276 | NA | other | upstream | 896424 | 6517482 ~ 6518189 (+) |
| G3597 | NA | other | upstream | 2557548 | 4856525 ~ 4857065 (+) |
| G3596 | NA | other | upstream | 2558365 | 4854521 ~ 4856248 (+) |
| G3351 | NA | other | upstream | 2972705 | 4439966 ~ 4441908 (+) |
| G6434 | NA | other | downstream | 174652 | 7725046 ~ 7725609 (+) |
| G6518 | NA | other | downstream | 334997 | 7885391 ~ 7885907 (+) |
| G6807 | NA | other | downstream | 486223 | 8036617 ~ 8037154 (+) |
| LOC110501328 | LOC106574178 | other | downstream | 678903 | 8229189 ~ 8231566 (+) |
| LOC110505168 | LOC106574179 | other | downstream | 704748 | 8255142 ~ 8271732 (+) |
