ddx59 (ddx59)


Basic Information

Item Value
gene id ddx59
gene name ddx59
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 7729593 ~ 7739189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021610754.2
gactaGAGACGTCATCAACATGAGTCTGCTTTCTGAGTGAGTCGACGTTGGATAAGATGCTTTATGCTCGCTAGCAGCTAGCTTCAGTTTGGGTGTTTACTTCGATATCTTTGTGTTTTTCATCAGCAATTAATCATTCGTTTTGTGTGTTTACTTGCGTCGTTTTGATCTTTAAATCGCAATGTAATTGCGCCAAAACCTGGTGTTGTTTTGTATCGCTAGCTGGCTAGGCTTGAAGTTACTAGCGTTTGCTAGCTGATGCCCACTCATCCGTGTACAGGTGGCATTATCACTGAGATAGTCTTTGATTAACGTTAAACATCGTGTATATCGTATTCGTAACCGTCTGTCACACCCATTCATGCTCTTTAGGATAATACTTTGGAAACATGTTTATGCCAAGAGCACTGAAAGTGAAGAGACCAACAGACAACACAAGTCAGGTGCTTAAGAAGAAGTGCAAGGTGAGCCAGGAGGGAGAAAAGGAAGGCAGTGATGGCACAGGACAACCCCCCAACCACAGCCTAAAGACTTCCACTACAGCTCCATATGGGAGTGTAGAGACAGACATTAATGCTGAGACACAGGTGAAGCCTGATGACCAGGACACACACCTTCCAACCCTGGAGCAGGGTACATGGAGTCCTGTACGAGCACCAGAGGACCAACAGTCCTCAGAGTCTGAGTCCAGCACCGAGGAAAGCGAAGAAGAGGAGCCTGTAAAATCCTTCAGAAAGAGCCAGAGATGGCCCGAACCGGGGGAGCCCGTCTGCGTCATGTGTGCTCGATTCGGGGAGTACATCTGCGACAGCACTGACAATGATGTGTGCAGCCTAGAGTGCAAGGCCAGTCACCTGGCTAAAATGGGCATGGGCACAGGGGAAGATGCCTTTAACCGAGATgacacagaggagaagaggacttCACAATGTGGACAGCCAGCTGTTGACAGAGCTGGCAATACTGTTGAGGATGTATACAAGGACTATTCCTACAAGGAAGATGCATTTATCTCTGGGTTGACAGAGGAGCAAGTGCAGCGAGTAAAGCAGGAGCTGGGCATTGTGACAGAGGGCAGGGAGGTGGGAAGGCCCATCATAGAGTTTGAGCAATGTAACCTTCCCTCAACTCTCAGTGCCAACCTGAAGAAGGCAGGGTATGAGGCGCCCACCCCTGTTCAGATGCAGATGGTGCCTGTTGGCTTGGCTGGCAGGGACGTGATTGCCAGTGCTGACACGGGTTCTGGGAAGACGGTGGCCTTTCTGCTGCCAGTGGTAGTgtgtgctttgaagAGGCTAGTGGAGGGTGGTCTCGGGGGTCCGGCAGCTCTCATCCTGACCCCCACCAGGGAGCTGGCCATCCAGATCGAGAGGCAGACCAAGGAGCTGGTGGTGGGCCTACCTAACATGAGGACTGGCCTGCTGGTGGGAGGCATGCCCCTGCCCCCGCAGCTCCACCGCCTCAAGAGCACCATCAAGATAATAATTGCTACCCCAGGACGACTGCTGGAGATCCTGAAACAGAAGGCAGTGCAGCTGGATGGAGTGAGGGTTGTGGTGGTTGATGAGGCAGACACCATGCTGAAGATGGGCTTTCAGCAGCAGATCCTGAAGGTTCTGGAGAACATCCCGGAGGAGCACCAGACCCTGCTAACATCCGCCACCATCCCCAAGGGCACAGAGCAGCTGGCAGCCCGACTGACCCAGGACCCGGTACGTATCGCCATCGGGGACAGGAACCAGCCCTGCGCCGACATCCGGCAGATAGTGCTCTGGGTGGAGGAGCCCTCCAAGAAGAAGAAGCTCTTTGAGATTTTAAATGACGGAAAGCTGTACCAGCCTCCGGTGGTTGTGTTTGTGGACTGTAAACTTGGGGCGGACCTACTGTGTGAGGCCGTGAAGAAGATCATGGGCCTCAACACGGTGGCCATCCACTCAGACAAGACCCAGTGGGAACGCAACCGCATCCTCAAGGGTCTACTCGAAGGGGACTTTGAAGTGGTGGTCAGCACTGGCGTACTGGGCAGAGGGCTCGATCTGGTCAACGTCAAACTGGTGGTCAACTTTGACATGCCGCCCAACATGGATGAGTATGTTCATCAGGTGGGCAGAGCAGGCAGACTGGGCCACCGGGGCACGGCCATCACCTTTGTCAACAACGACAACAAGCGTCTGTTCCTGGAGGTGGTGAACCGGGTGAAGCCCACAGGTTCCCAGCTTCCCCCCCAGCTTCTCAACTCCCCCCACCTCCACGAGCAGCAGAGGAGGGACAAACAGAAAGCCAAGCAAAGGGGGGAGGATGACATCATGGTCACCAAGAACAACCTCCTCAGCATCATCCGGAAACACAACAGGAGCTCAAAGAGATAGACAGATTATGCtactttgtgtttgtgtgtgtatatctgggTAATTTGTCCATTTTGAATAAACTTATATGAACTTGTAA
>XM_021610817.2
gactaGAGACGTCATCAACATGAGTCTGCTTTCTGAGTGAGTCGACGTTGGATAAGATGCTTTATGCTCGCTAGCAGCTAGCTTCAGTTTGGGTGTTTACTTCGATATCTTTGTGTTTTTCATCAGCAATTAATCATTCGTTTTGTGTGTTTACTTGCGTCGTTTTGATCTTTAAATCGCAATGTAATTGCGCCAAAACCTGGTGTTGTTTTGTATCGCTAGCTGGCTAGGCTTGAAGTTACTAGCGTTTGCTAGCTGATGCCCACTCATCCGTGTACAGGTGGCATTATCACTGAGATAGTCTTTGATTAACGTTAAACATCGTGTATATCGTATTCGTAACCGTCTGTCACACCCATTCATGCTCTTTAGGATAATACTTTGGAAACATGTTTATGCCAAGAGCACTGAAAGTGAAGAGACCAACAGACAACACAAGTCAGGTGCTTAAGAAGAAGTGCAAGGTGAGCCAGGAGGGAGAAAAGGAAGGCAGTGATGGCACAGGACAACCCCCCAACCACAGCCTAAAGACTTCCACTACAGCTCCATATGGGAGTGTAGAGACAGACATTAATGCTGAGACACAGGTGAAGCCTGATGACCAGGACACACACCTTCCAACCCTGGAGCAGGGTACATGGAGTCCTGTACGAGCACCAGAGGACCAACAGTCCTCAGAGTCTGAGTCCAGCACCGAGGAAAGCGAAGAAGAGGAGCCTGTAAAATCCTTCAGAAAGAGCCAGAGATGGCCCGAACCGGGGGAGCCCGTCTGCGTCATGTGTGCTCGATTCGGGGAGTACATCTGCGACAGCACTGACAATGATGTGTGCAGCCTAGAGTGCAAGGCCAGTCACCTGGCTAAAATGGGCATGGGCACAGGGGAAGATGCCTTTAACCGAGATgacacagaggagaagaggacttCACAATGTGGACAGCCAGCTGTTGACAGAGCTGGCAATACTGTTGAGGATGTATACAAGGACTATTCCTACAAGGAAGATGCATTTATCTCTGGGTTGACAGAGGAGCAAGTGCAGCGAGTAAAGCAGGAGCTGGGCATTGTGACAGAGGGCAGGGAGGTGGGAAGGCCCATCATAGAGTTTGAGCAATGTAACCTTCCCTCAACTCTCAGTGCCAACCTGAAGAAGGCAGGGTATGAGGCGCCCACCCCTGTTCAGATGCAGATGGTGCCTGTTGGCTTGGCTGGCAGGGACGTGATTGCCAGTGCTGACACGGGTTCTGGGAAGACGGTGGCCTTTCTGCTGCCAGTGGTAGTgtgtgctttgaagAGGCTAGTGGAGGGTGGTCTCGGGGGTCCGGCAGCTCTCATCCTGACCCCCACCAGGGAGCTGGCCATCCAGATCGAGAGGCAGACCAAGGAGCTGGTGGTGGGCCTACCTAACATGAGGACTGGCCTGCTGGTGGGAGGCATGCCCCTGCCCCCGCAGCTCCACCGCCTCAAGAGCACCATCAAGATAATAATTGCTACCCCAGGACGACTGCTGGAGATCCTGAAACAGAAGGCAGTGCAGCTGGATGGAGTGAGGGTTGTGGTGGTTGATGAGGCAGACACCATGCTGAAGATGGGCTTTCAGCAGCAGATCCTGAAGGTTCTGGAGAACATCCCGGAGGAGCACCAGACCCTGCTAACATCCGCCACCATCCCCAAGGGCACAGAGCAGCTGGCAGCCCGACTGACCCAGGACCCGGACGGAAAGCTGTACCAGCCTCCGGTGGTTGTGTTTGTGGACTGTAAACTTGGGGCGGACCTACTGTGTGAGGCCGTGAAGAAGATCATGGGCCTCAACACGGTGGCCATCCACTCAGACAAGACCCAGTGGGAACGCAACCGCATCCTCAAGGGTCTACTCGAAGGGGACTTTGAAGTGGTGGTCAGCACTGGCGTACTGGGCAGAGGGCTCGATCTGGTCAACGTCAAACTGGTGGTCAACTTTGACATGCCGCCCAACATGGATGAGTATGTTCATCAGGTGGGCAGAGCAGGCAGACTGGGCCACCGGGGCACGGCCATCACCTTTGTCAACAACGACAACAAGCGTCTGTTCCTGGAGGTGGTGAACCGGGTGAAGCCCACAGGTTCCCAGCTTCCCCCCCAGCTTCTCAACTCCCCCCACCTCCACGAGCAGCAGAGGAGGGACAAACAGAAAGCCAAGCAAAGGGGGGAGGATGACATCATGGTCACCAAGAACAACCTCCTCAGCATCATCCGGAAACACAACAGGAGCTCAAAGAGATAGACAGATTATGCtactttgtgtttgtgtgtgtatatctgggTAATTTGTCCATTTTGAATAAACTTATATGAACTTGTAA

Function

symbol description
ddx59 Predicted to enable RNA binding activity and RNA helicase activity. Human ortholog(s) of this gene implicated in orofaciodigital syndrome V. Orthologous to human DDX59 (DEAD-box helicase 59).

NR:

description
probable ATP-dependent RNA helicase DDX59 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K19466 DDX59; ATP-dependent RNA helicase DDX59

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021610754.2 False 2448 mRNA 0.53 7 7729593 7739189
XM_021610817.2 True 2340 mRNA 0.53 7 7729593 7739189

Neighbor

gene id symbol gene type direction distance location
LOC110531419 LOC106574164 coding downstream 4141 7704811 ~ 7727531 (-)
LOC110528129 nppc coding downstream 949714 6774389 ~ 6779879 (-)
LOC110528054 NA coding downstream 969045 6757914 ~ 6760548 (-)
LOC118966762 NA coding downstream 981462 6748011 ~ 6748131 (-)
LOC118966755 NA coding downstream 981883 6747638 ~ 6747710 (-)
dynlt2b tctex1d2 coding upstream 400979 8140168 ~ 8147503 (-)
LOC118965595 NA coding upstream 438092 8177281 ~ 8182131 (-)
LOC110529671 rubcn coding upstream 535449 8274638 ~ 8341087 (-)
LOC110529747 tsc22d2 coding upstream 633404 8330314 ~ 8419050 (-)
LOC110508833 rnf13 coding upstream 756736 8495925 ~ 8580590 (-)
G6600 NA non-coding downstream 127 7728380 ~ 7729466 (-)
G6625 NA non-coding downstream 18767 7710554 ~ 7710826 (-)
G6622 NA non-coding downstream 28544 7700846 ~ 7701049 (-)
G6384 NA non-coding downstream 145536 7583505 ~ 7584057 (-)
G6337 NA non-coding downstream 147448 7494737 ~ 7582145 (-)
G6653 NA non-coding upstream 50021 7789210 ~ 7789682 (-)
G6657 LOC106574165 non-coding upstream 66316 7805505 ~ 7839925 (-)
G6659 NA non-coding upstream 67649 7806838 ~ 7807499 (-)
G6674 NA non-coding upstream 94684 7833873 ~ 7834195 (-)
G6688 NA non-coding upstream 115244 7854433 ~ 7855416 (-)
G6347 NA other downstream 211772 7514111 ~ 7517821 (-)
G5487 NA other downstream 979557 6740509 ~ 6750036 (-)
mfsd8l1 LOC106574194 other downstream 1178247 6537498 ~ 6551510 (-)
G4804 NA other downstream 1711517 6016822 ~ 6018076 (-)
G6706 NA other upstream 145154 7884343 ~ 7885000 (-)
G6810 LOC107579696 other upstream 299990 8039179 ~ 8039463 (-)
G7184 LOC100135997 other upstream 425087 8164276 ~ 8183933 (-)
G7985 NA other upstream 1414081 9153270 ~ 9153947 (-)

Expression


Co-expression Network