dynlt2b (tctex1d2)


Basic Information

Item Value
gene id dynlt2b
gene name tctex1d2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8140168 ~ 8147503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611474.2
TGTTGATGAAGAACAGAAGAAGCGTGCGCTGGATCTGGCTAAGTTGTTCACGTCAGAAACAACACGTATTGATCTTCGCAGTAGGGCGCCTGCCAAAGGAGTTATAGCTGGAGTCTCGTTGGATATAGATGACGAGTACATTAGTCAGACAAGCCCAGGAGTGGTCAGTgTTCAAAGCAGCTGTTGTGAAGGAATGCATTCATGATATCCTGAGAGAACAACTGTCTGGGGTGCAGTACGATCCGGATGAGGTCGGCGTTCTGTCCCGTTCATTAGCAGATTGCATAAAGGACAAACTGAAGGATGTGGGCTTTGACCGATACAAGCTGGTGGTACAAGTGGTAATTGGAGAGCAGCGAGGAGAAGGTGTCAAGATGGCTGCCAGGTGTTTCTGGGATGCTGACACAGACAGCTACGCTCAGGACATTTTCATGAATGACAGTTTGTTCTGTGTGGCGGCTGCTTTCGGCAGTTATTTCTACTGAGGACAAAAGAAGATGGGAAGATTTTGCAATAGCTTTGCTATTTTAAAAGCACTCATGACTTCAGTAATTGCATAATTACTTTGACACAAGAACTTTTGAAATGAGAGTGCTCCACATAAGACATCCAAATAAACAGAAAAAGATCCTCAAAGCATCTCCGAGTAGAAGTGATGATCCAGGATCAGTTTAACCTTTTTTTAGATCATAGTGAGTAGGATTACagggacagatcctagatcagaacttcTACACTGAGATTCTTTGTGGATTCGAGCCGAGAACTTGCCCTTTCCCTGGGGGAAGATGCACTGTGCAATCTCtgttgtgttttttgttgttgtaagtaGCAGCAAATTATAGTTAAATACTCTGACAGAAAGAGGACTGTTGCCTTGCTTAATAACTGCAGAGGACAACAAGACAGGCACTGTTTTATTCATACTAATGTCAAGTCAACCTGAGAATAAAACATGCATAACCTACACGCAGACTGTAACTGTaacatggtgttaaatgctgtcTACCAATGTTTCTTTCTAGTGTATGTCACTTTACATCACCCTTATTGCTATTTGTATACAAGATTAGTTTATTAAATGTAATTAATTTCAAATAT
>XM_021611283.2
ACTGGTTAATTGTGTTGATGAAGAACAGAAGAAGCGTGCGCTGGATCTGGCTAAGTTGTTCACGTCAGAAACAACACGTATTGATCTTCGCAGTAGGGCGCCTGCCAAAGGAGTTATAGCTGGAGTCTCGTTGGATATAGATGACGAGTACATTAGTCAGACAAGCCCAGGAGTGGTCAGTgTTCAAAGCAGCTGTTGTGAAGGAATGCATTCATGATATCCTGAGAGAACAACTGTCTGGGGTGCAGTACGATCCGGATGAGGTCGGCGTTCTGTCCCGTTCATTAGCAGATTGCATAAAGGACAAACTGAAGGATGTGGGCTTTGACCGATACAAGCTGGTGGTACAAGTGGTAATTGGAGAGCAGCGAGGAGAAGGTGTCAAGATGGCTGCCAGGTGTTTCTGGGATGCTGACACAGACAGCTACGCTCAGGACATTTTCATGAATTTTGTTCTGTGTGGCGGCTGCTTTCGGCAGTTATTTCTACTGAGGACAAAAGAAGATGGGAAGATTTTGCAATAGCTTTGCTATTTTAAAAGCACTCATGACTTCAGTAATTGCATAATTACTTTGACACAAGAACTTTTGAAATGAGAGTGCTCCACATAAGACATCCAAATAAACAGAAAAAGATCCTCAAAGCATCTCCGAGTAGAAGTGATGATCCAGGATCAGTTTAACCTTTTTTTAGATCATAGTGAGTAGGATTACagggacagatcctagatcagaacttcTACACTGAGATTCTTTGTGGATTCGAGCCGAGAACTTGCCCTTTCCCTGGGGGAAGATGCACTGTGCAATCTCtgttgtgttttttgttgttgtaagtaGCAGCAAATTATAGTTAAATACTCTGACAGAAAGAGGACTGTTGCCTTGCTTAATAACTGCAGAGGACAACAAGACAGGCACTGTTTTATTCATACTAATGTCAAGTCAACCTGAGAATAAAACATGCATAACCTACACGCAGACTGTAACTGTaacatggtgttaaatgctgtcTACCAATGTTTCTTTCTAGTGTATGTCACTTTACATCACCCTTATTGCTATTTGTATACAAGATTAGTTTATTAAATGTAATTAATTTCAAATAT
>XM_021611403.2
AATGGCGACTGCTTGAATCTGAAAGTGTCCAAAAGTGAAGTGTGTGACAATGAATGTAAAATAGTGAAATCAAAGAATGGAACAAAACGAGCAAAAGTTGTGGTAGAAGACAAGGATCGGTCGCACTGCAATGCACTGCGTTAAGAGATTCATTTGGGAACTCCCATTTGCAATATAACGTTATAGGACTGAAGAAATGTGGATTCAATCAAGgTTCAAAGCAGCTGTTGTGAAGGAATGCATTCATGATATCCTGAGAGAACAACTGTCTGGGGTGCAGTACGATCCGGATGAGGTCGGCGTTCTGTCCCGTTCATTAGCAGATTGCATAAAGGACAAACTGAAGGATGTGGGCTTTGACCGATACAAGCTGGTGGTACAAGTGGTAATTGGAGAGCAGCGAGGAGAAGGTGTCAAGATGGCTGCCAGGTGTTTCTGGGATGCTGACACAGACAGCTACGCTCAGGACATTTTCATGAATTTTGTTCTGTGTGGCGGCTGCTTTCGGCAGTTATTTCTACTGAGGACAAAAGAAGATGGGAAGATTTTGCAATAGCTTTGCTATTTTAAAAGCACTCATGACTTCAGTAATTGCATAATTACTTTGACACAAGAACTTTTGAAATGAGAGTGCTCCACATAAGACATCCAAATAAACAGAAAAAGATCCTCAAAGCATCTCCGAGTAGAAGTGATGATCCAGGATCAGTTTAACCTTTTTTTAGATCATAGTGAGTAGGATTACagggacagatcctagatcagaacttcTACACTGAGATTCTTTGTGGATTCGAGCCGAGAACTTGCCCTTTCCCTGGGGGAAGATGCACTGTGCAATCTCtgttgtgttttttgttgttgtaagtaGCAGCAAATTATAGTTAAATACTCTGACAGAAAGAGGACTGTTGCCTTGCTTAATAACTGCAGAGGACAACAAGACAGGCACTGTTTTATTCATACTAATGTCAAGTCAACCTGAGAATAAAACATGCATAACCTACACGCAGACTGTAACTGTaacatggtgttaaatgctgtcTACCAATGTTTCTTTCTAGTGTATGTCACTTTACATCACCCTTATTGCTATTTGTATACAAGATTAGTTTATTAAATGTAATTAATTTCAAATAT
>XM_021611340.2
ACCGTTGAGAAGGTTACGCTTGGTTCGTTACACTTCCGGAAGCGGAAATGTTGTTATGGTAACATTAGCAAACGTTTATTCAAGCCTCTTGAGGCTTTAGCTCAATCTCCATTGCCATGTGTTATGTATTATTTgctaaataagcttttttttaccATCCAACGCACCATAATACATACTCAGTTAAAATGGAGGGAACAGATACCGGAGGAAATACTTACCTCATTAGACCGAATTATCATCACAAgTTCAAAGCAGCTGTTGTGAAGGAATGCATTCATGATATCCTGAGAGAACAACTGTCTGGGGTGCAGTACGATCCGGATGAGGTCGGCGTTCTGTCCCGTTCATTAGCAGATTGCATAAAGGACAAACTGAAGGATGTGGGCTTTGACCGATACAAGCTGGTGGTACAAGTGGTAATTGGAGAGCAGCGAGGAGAAGGTGTCAAGATGGCTGCCAGGTGTTTCTGGGATGCTGACACAGACAGCTACGCTCAGGACATTTTCATGAATGACAGTTTGTTCTGTGTGGCGGCTGCTTTCGGCAGTTATTTCTACTGAGGACAAAAGAAGATGGGAAGATTTTGCAATAGCTTTGCTATTTTAAAAGCACTCATGACTTCAGTAATTGCATAATTACTTTGACACAAGAACTTTTGAAATGAGAGTGCTCCACATAAGACATCCAAATAAACAGAAAAAGATCCTCAAAGCATCTCCGAGTAGAAGTGATGATCCAGGATCAGTTTAACCTTTTTTTAGATCATAGTGAGTAGGATTACagggacagatcctagatcagaacttcTACACTGAGATTCTTTGTGGATTCGAGCCGAGAACTTGCCCTTTCCCTGGGGGAAGATGCACTGTGCAATCTCtgttgtgttttttgttgttgtaagtaGCAGCAAATTATAGTTAAATACTCTGACAGAAAGAGGACTGTTGCCTTGCTTAATAACTGCAGAGGACAACAAGACAGGCACTGTTTTATTCATACTAATGTCAAGTCAACCTGAGAATAAAACATGCATAACCTACACGCAGACTGTAACTGTaacatggtgttaaatgctgtcTACCAATGTTTCTTTCTAGTGTATGTCACTTTACATCACCCTTATTGCTATTTGTATACAAGATTAGTTTATTAAATGTAATTAATTTCAAATAT
>XM_021611230.2
TTTCCAACAACCGTTGAGAAGGTTACGCTTGGTTCGTTACACTTCCGGAAGCGGAAATGTTGTTATGGTAACATTAGCAAACGTTTATTCAAGCCTCTTGAGGCTTTAGCTCAATCTCCATTGCCATGTGTTATGTATTATTTgctaaataagcttttttttaccATCCAACGCACCATAATACATACTCAGTTAAAATGGAGGGAACAGATACCGGAGGAAATACTTACCTCATTAGACCGAATTATCATCACAAgTTCAAAGCAGCTGTTGTGAAGGAATGCATTCATGATATCCTGAGAGAACAACTGTCTGGGGTGCAGTACGATCCGGATGAGGTCGGCGTTCTGTCCCGTTCATTAGCAGATTGCATAAAGGACAAACTGAAGGATGTGGGCTTTGACCGATACAAGCTGGTGGTACAAGTGGTAATTGGAGAGCAGCGAGGAGAAGGTGTCAAGATGGCTGCCAGGTGTTTCTGGGATGCTGACACAGACAGCTACGCTCAGGACATTTTCATGAATTTTGTTCTGTGTGGCGGCTGCTTTCGGCAGTTATTTCTACTGAGGACAAAAGAAGATGGGAAGATTTTGCAATAGCTTTGCTATTTTAAAAGCACTCATGACTTCAGTAATTGCATAATTACTTTGACACAAGAACTTTTGAAATGAGAGTGCTCCACATAAGACATCCAAATAAACAGAAAAAGATCCTCAAAGCATCTCCGAGTAGAAGTGATGATCCAGGATCAGTTTAACCTTTTTTTAGATCATAGTGAGTAGGATTACagggacagatcctagatcagaacttcTACACTGAGATTCTTTGTGGATTCGAGCCGAGAACTTGCCCTTTCCCTGGGGGAAGATGCACTGTGCAATCTCtgttgtgttttttgttgttgtaagtaGCAGCAAATTATAGTTAAATACTCTGACAGAAAGAGGACTGTTGCCTTGCTTAATAACTGCAGAGGACAACAAGACAGGCACTGTTTTATTCATACTAATGTCAAGTCAACCTGAGAATAAAACATGCATAACCTACACGCAGACTGTAACTGTaacatggtgttaaatgctgtcTACCAATGTTTCTTTCTAGTGTATGTCACTTTACATCACCCTTATTGCTATTTGTATACAAGATTAGTTTATTAAATGTAATTAATTTCAAATAT

Function

symbol description
tctex1d2 tctex1 domain-containing protein 2

NR:

description
tctex1 domain-containing protein 2 isoform X1

GO: NA

KEGG:

id description
K22866 TCTEX1D2; tctex1 domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611474.2 False 1101 mRNA 0.42 5 8140168 8146842
XM_021611283.2 False 1108 mRNA 0.41 5 8140168 8146854
XM_021611403.2 False 1140 mRNA 0.40 5 8140168 8147089
XM_021611340.2 False 1179 mRNA 0.40 5 8140168 8147494
XM_021611230.2 True 1183 mRNA 0.40 5 8140168 8147503

Neighbor

gene id symbol gene type direction distance location
ddx59 ddx59 coding downstream 400979 7729593 ~ 7739189 (-)
LOC110531419 LOC106574164 coding downstream 414716 7704811 ~ 7727531 (-)
LOC110528129 nppc coding downstream 1360289 6774389 ~ 6779879 (-)
LOC110528054 NA coding downstream 1379620 6757914 ~ 6760548 (-)
LOC118966762 NA coding downstream 1392037 6748011 ~ 6748131 (-)
LOC118965595 NA coding upstream 29778 8177281 ~ 8182131 (-)
LOC110529671 rubcn coding upstream 127135 8274638 ~ 8341087 (-)
LOC110529747 tsc22d2 coding upstream 225090 8330314 ~ 8419050 (-)
LOC110508833 rnf13 coding upstream 348422 8495925 ~ 8580590 (-)
LOC110530501 LOC106574127 coding upstream 471277 8618780 ~ 8666735 (-)
G6881 NA non-coding downstream 44209 8095615 ~ 8095959 (-)
G6875 NA non-coding downstream 51599 8088131 ~ 8088569 (-)
G6872 NA non-coding downstream 57873 8082068 ~ 8082295 (-)
G6865 NA non-coding downstream 68294 8070836 ~ 8071874 (-)
G6863 NA non-coding downstream 71846 8067675 ~ 8068322 (-)
G7211 NA non-coding upstream 47246 8194749 ~ 8225628 (-)
G7213 LOC106574176 non-coding upstream 49623 8197126 ~ 8231786 (-)
G7238 NA non-coding upstream 93373 8240876 ~ 8241121 (-)
G7241 NA non-coding upstream 95819 8243322 ~ 8249204 (-)
G7250 NA non-coding upstream 111824 8259327 ~ 8259527 (-)
G6810 LOC107579696 other downstream 100705 8039179 ~ 8039463 (-)
G6706 NA other downstream 255168 7884343 ~ 7885000 (-)
G6347 NA other downstream 622347 7514111 ~ 7517821 (-)
G5487 NA other downstream 1390132 6740509 ~ 6750036 (-)
G7184 LOC100135997 other upstream 16773 8164276 ~ 8183933 (-)
G7985 NA other upstream 1005767 9153270 ~ 9153947 (-)
G7965 NA other upstream 1033952 9181455 ~ 9194911 (-)
G8455 LOC106574127 other upstream 1420438 9567941 ~ 9590586 (-)

Expression


Co-expression Network