LOC100135997 (LOC100135997)


Basic Information

Item Value
gene id LOC100135997
gene name LOC100135997
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8117910 ~ 8197019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036974755.1
CAACAGAGGTATTGATGTCAGTTGTCCAAATGCAGAGCCAATCAACAATCAGCTGGACAGCCCAGTCATTGTAGATAGCATATATAAAACCCAGTGAGTAGACAAAATCTCACGGACAGACATACGTTTCGAAAAGCTACAGCTAAACTGTCCGTTTTGGAAACCTGCTACTTCCCCTGCTCAGAAGCAATGGATCTTCAGGAATGGGCCAGCATTCTCCAGAACACGATTGAGGAGCATGACATAGAGGACACCTGGAGCATTGAATTTGATAGCGCCATCATTCCTGATCACCCAGCGAGAGGTTGGCAGCAGTACATCAGTGGGGCATTTGCAAGGTTCATGTGCTCAAAGTGTAAGAGGACCTGGCCTTCGAAAAGAGTTCTGGTGGTGTTTCACATGCGTCTGTTGGAGGACAAGGGGATGGTTAAAGTGAAACGCTACAGACAGGAGTGCAAGAAGTGTGTACAGAGTACAATGGAGGAGCCTCATTTTAAGACAGAGAACATTGAGGTTCTGCTGGAGAAGCTTGTTGTGAAGATCCTCGTCAAGTGCTACTATAAGGACGCAGGCGAAAATAATAACCCATTCCATTTGGAAGGGAGGAGTGATGGACCCCATGAGGCTGCCCATTGTGAAGCCTGTAAACATGGCATCTGCAGACAGGTGTACAAATCATATCCCATGTGTCAGGTGATGATGACCTTTATGGTGCAGAGACGACTGTCTACAATGCAAATGCATACAAGCAAGGCAACATTGCTTTAGAAGCACATTTGCATGGATTACAAATATTTGTGGGACTTTACACAGATCTTAGTGTGCAAAACGTGACAACATTTTTAtaatgttcagtgtgtgtgtgtgtgtactttgctTATGACATCAGCAGGGAGTTAAACACCCTTATATGATTTATAACTTTGAGTCAAATGTCCTGACCTGCTATAAAACTGCTTTAAAAAT
>XM_036975274.1
CAACAGAGGTATTGATGTCAGTTGTCCAAATGCAGAGCCAATCAACAATCAGCTGGACAGCCCAGTCATTGTAGATAGCATATATAAAACCCAGTGAGTAGACAAAATCTCACGGACAGACATACGTTTCGAAAAGCTACAGCTAAACTGTCCGTTTTGGAAACCTGCTACTTCCCCTGCTCAGAAGCAATGGATCTTCAGGAATGGGCCAGCATTCTCCAGAACACGATTGAGGAGCATGACATAGAGGACACCTGGAGCATTGAATTTGATAGCGCCATCATTCCTGATCACCCAGCGAGAGGTTGGCAGCAGTACATCAGTGGGGCATTTGCAAGGTTCATGTGCTCAAAGTGTAAGAGGACCTGGCCTTCGAAAAGAGTTCTGGTGGTGTTTCACATGCGTCTGTTGGAGGACAAGGGGATGGTTAAAGTGAAACGCTACAGACAGGAGTGCAAGAAGTGTGTACAGAGTACAATGGAGGAGCCTCATTTTAAGACAGAGAACATTGAGGTTCTGCTGGAGAAGCTTGTTGTGAAGATCCTCGTCAAGTGCTACTATAAGGACGCAGGCGAAAATAATAACCCATTCCATTTGGAAGGGAGGAGTGATGGACCCCATGAGGCTGCCCATTGTGAAGCCTGTAAACATGGCATCTGCAGACAGGTGACCACAAAAGAAACAGAATGAAAAATATAGAAACATCTGGGAAATGTTTAACTCCTAAATGTATTGTATAATCAATGAACAATTTTGAGGAGAGTTGGATGTCGAACTGGATATAATACTGTAAAGATAATTGTATTTCCTGATGAAGCTGCGAAAACGATATCCTCTGAATCAaggatggatggggggggggggggggggggagaaggcaTTAACTGAATTGTCCACCATTTCATCCAGACgaaatgtacttgtttttttttatacaaaagtTGATAGTTGATTGAGAAAGTAGTTTCCATTATATGCATTCTTTTGCAATAATCTCTTACACTTTAAAAAGAGTTGAAGGAATTACTTCTCAACAGGTGTACAAATCATATCCCATGTGTCAGGTGATGATGACCTTTATGGTGCAGAGACGACTGTCTACAATGCAAATGCATACAAGCAAGGCAACATTGCTTTAGAAGCACATTTGCATGGATTACAAATATTTGTGGGACTTTACACAGATCTTAGTGTGCAAAACGTGACAACATTTTTAtaatgttcagtgtgtgtgtgtgtgtactttgctTATGACATCAGCAGGGAGTTAAACACCCTTATATGATTTATAACTTTGAGTCAAATGTCCTGACCTGCTATAAAACTGCTTTAAAAAT
>NM_001124334.1
ACGGACAGACATACGTTTCGAAAAGCTACAGCTAAACTGTCCGTTTTGGAAACCTGCTACTTCCCCTGCTCAGAAGCAATGGATCTTCAGGAATGGGCCAGCATTCTCCAGAACACGATTGAGGAGCATGACATAGAGGACACCTGGAGCATTGAATTTGATAGCGCCATCATTCCTGATCACCCAGCGAGAGGTTGGCAGCAGTACATCAGTGGGGCATTTGCAAGGTTCATGTGCTCAAAGTGTAAGAGGACCTGGCCTTCGAAAAGAGTTCTGGTGGTGTTTCACATGCGTCTGTTGGAGGACAAGGGGATGGTTAAAGTGAAACGCTACAGACAGGAGTGCAAGAAGTGTGTACAGAGTACAATGGAGGAGCCTCATTTTAAGACAGAGAACATTGAGGTTCTGCTGGAGAAGCTTGTTGTGAAGATCCTCGTCAAGTGCTACTATAAGGACGCAGGCGAAAATAATAACCCATTCCATTTGGAAGGGAGGAGTGATGGACCCCATGAGGCTGCCCATTGTGAAGCCTGTAAACATGGCATCTGCAGACAGGTGACCACAAAAGAACAGAATGAAAAATATAGAAACATCTGGGAAATGTTTAACTCCTAAATGTATTGTATAATCAATGAACAATTTTGAGGAGAGTTGGATGTCGAACTGGATATAATACTGTAAAGATAATTGTATTTCCTGATGAAGCTGCGAAAACGATATCCTCTGAATCAaggatggatggggggggggggggggggggagaaggcaTTAACTGAATTGTCCACCATTTCATCCAGACgaaatgtacttgtttttttttatacaaaagtTGATAGTTGATTGAGAAAGTAGTTTCCATTATATGCATTCTTTTGCAATAATCTCTTACACTTTAAAAAGAGTTGAAGGAATTACTTCTCAACAGGTGTACAAATCATATCCCATGTGTCAGGTGATGATGACCTTTATGGTGCAGAGACGACTGTCTACAATGCAAATGCATACAAGCAAGGCAACATTGCTTTAGAAGCACATTTGCATGGATTACAAATATTTGTGGGACTTTACACAGATCTTAGTGTGCAAAACGTGACAACATTTTTAtaatgttcagtgtgtgtgtgtgtgtactttgctTATGACATCAGCAGGGAGTTAAACACCCTTATATGATTTATAACTTTGAGTCAAATGTCCTGACCTGCTATAAAACTGCTTTAAAAAT
>TU8505
ggggggggggggggggggggggggggggcaTTAACTGAATTGTCCACCATTTCATCCAGACgaaatgtacttgtttttttttatacaaaagtTGATAGTTGATTGAGAAAGTAGTTTCCATTATATGCATTCTTTTGCAATAATCTCTTACACTTTAAAAAGAGTTGAAGGAATTACTTCTCAACAGGTGTACAAATCATATCCCATGTGTCAGGTGATGATGACCTTTATGGTGCAGAGACGACTGTCTACAATGCAAATGCATACAAGCAAGGCAACATTGCTTTAGAAGCACATTTGCATGGATTACAAATATTTGTGGGACTTTACACAGATCTTAGTGTGCAAAACGTGACAACATTTTTAtaatgttcagtgtgtgtgtgtgtttctcttatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036974755.1 False 966 mRNA 0.44 3 8182237 8184031
XM_036975274.1 False 1337 mRNA 0.42 2 8182237 8184031
NM_001124334.1 False 1225 mRNA 0.42 3 8182348 8184031
TU8505 True 400 lncRNA 0.44 3 8117910 8197019

Neighbor

gene id symbol gene type direction distance location
LOC110529397 LOC106574172 coding upstream 19850 8152073 ~ 8162387 (+)
nmur1a LOC106574171 coding upstream 96267 8048995 ~ 8085970 (+)
LOC118966768 NA coding upstream 229349 7952793 ~ 7952888 (+)
LOC110528925 hykk coding upstream 247020 7900761 ~ 7935217 (+)
LOC110528839 LOC106574168 coding upstream 299351 7840680 ~ 7882886 (+)
LOC110529481 LOC106574173 coding downstream 3898 8187929 ~ 8191228 (+)
LOC110529566 LOC106574176 coding downstream 8651 8192682 ~ 8199666 (+)
LOC110497697 LOC106574176 coding downstream 25302 8209333 ~ 8213887 (+)
LOC118943893 LOC106574176 coding downstream 40334 8224365 ~ 8225267 (+)
LOC110501328 LOC106574178 coding downstream 45158 8229189 ~ 8231566 (+)
G6912 NA non-coding upstream 34760 8145046 ~ 8147477 (+)
G6821 NA non-coding upstream 94492 8086029 ~ 8087745 (+)
G6844 NA non-coding upstream 105639 8076370 ~ 8076598 (+)
G6838 NA non-coding upstream 113975 8067935 ~ 8068262 (+)
G6946 LOC106574176 non-coding downstream 25431 8209462 ~ 8225068 (+)
G6964 NA non-coding downstream 56404 8240435 ~ 8240724 (+)
G6967 NA non-coding downstream 59252 8243283 ~ 8249184 (+)
G6969 NA non-coding downstream 68431 8252462 ~ 8252670 (+)
G6978 NA non-coding downstream 79619 8263650 ~ 8263921 (+)
G6807 NA other upstream 145083 8036617 ~ 8037154 (+)
G6518 NA other upstream 296330 7885391 ~ 7885907 (+)
G6434 NA other upstream 456628 7725046 ~ 7725609 (+)
G5581 NA other upstream 1370616 6810994 ~ 6811621 (+)
G5276 NA other upstream 1664048 6517482 ~ 6518189 (+)
LOC110505168 LOC106574179 other downstream 71111 8255142 ~ 8271732 (+)
LOC118966784 LOC106574127 other downstream 1274917 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1799744 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1957213 10140230 ~ 10162948 (+)
LOC110528753 LOC106574165 coding upstream 277976 7741562 ~ 7839951 (+)
LOC110529807 pfn2 coding downstream 289635 8486654 ~ 8494344 (+)
G6812 NA non-coding upstream 76492 8041035 ~ 8041418 (+)

Expression


Co-expression Network