LOC110529481 (LOC106574173)


Basic Information

Item Value
gene id LOC110529481
gene name LOC106574173
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8187929 ~ 8191228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611716.2
CCAGGTcattcttagctacagtataagtGTGTGTGAAGAAGAAGGATAACAACAACAAGTCAAAGGGTTTGGCTACTTCACCAAAAGAGCAATGACTAACCGAGAATGGATTAGGATTTTTCAATCAAAGGTCAATAATCTGAAGAGGAATAAGAGAGACCGCTGGCGTATCGAGTTTGATGAGTCCATTAAGGCAGACAATGTGCAATTTGGCTGGCATCAGTACATCAGTGGGGCATTTGGAAGGTTCAAGTGCTCCAAGTGTAACAGAAGTTGGTCCTCTGGCCGGGTGAATGTGGTGTTTCACATGCATCTATCGTCAGGGCAGGGAATGGTGAAAGTGCGATGTTTGCGTCAGGAATGCAGGCAATGTGACGGCGCTCTTATGGAGGAGGCCAGTTTCGATGAGGAGAAACTCGAAGTCCTACTGGAGAAACTGATGGAGAAGATTCGTGTCAAGTGCTACCGCGAGAACCTGGGCAAGAGAAACAGACGTGATTTCGATGACGAAGACGATGAAGGTCCCCCCCATGAGAGTGCCCATTGCGAAGCCTGCAGTATGGGCCTTTGCACAAAGCGTTTTAAAGCCCGGTAGAATATGGTAGAAATAGACTGGTATACGCCCTAATACACTTTTTATAATATTTCTCTTTGTTTTActtgtctatatctagtggtcaTTGGGTACACCCTAATGTCTAATTGCTAAAGCTATTTGTTGATTAAATAAATGCAGTGAGACACTGGTGGAACTGGTGGAAGATAGGTGTGGCTGCACAGGGCACAACGAAAGTGGAATAAGAGCCTCAGCAACGTGAgattagagaggtagagaaggttCCTCAGCTATGTGaggttagagaggtagagaaggttCCTCTACTATGTGAGATTAAAGAGGTAGAGAAGGTTCAGAGAAGTAGAGAAGGTTCCTCGGCTATGTGaggttagagaggtagagaaggttCCTCTACTATGTGAgattagagaggtagagaaggttCCTCTACTATGTGAGGTTAGAGAAGTAGAGAAGGTTCCTCAGCTATGTGaggttagagaggtagagaaggttCCTCTACTATGTGAgattagagaggtagagaaggttCCTCTACTATGTGAGGTTAGAGAAGTAGAGAAGGTTCCTCAGCTATGTGAGGTTAGAGAAGTAGAGAATTTTCCTCAGCTATGTGgggttagagaggtagagaaggttCCTCAGCTATGTGgggttagagaggtagagaaggttCCTCTACTTGTGATTCCTTTGAAGAGGAAATGGATTGCCTTTATTTTGCAGCTGTTCCAGTGTGTGTACAAACaatgtgtcacgtcctgaccttagttccttttttatgtctctattttggtttggtcagggcgtgagttgaggggtgggcattctatgtgttttttctatgttttctatttctatgtgtttgacctggtatggttcccaatcagaggcagctgtaaatcgttgtccctgattgagaaccatacttaggtagccttttcccacctgtgttttgtgggtaattattttttccctgtgtgtttgtgtgcacctcgTGTTGTGTCAcggtcttttttttcttttttctgttTACCTGTTTGTTTCTTGGTTGTTTCTGTTTCACTTTCATTAAAAGACGTGGAACTACATGCACACTGCGCCTTGGTTGATTTATGACAGGAAGTTTGACGATAGCCAGCGTGACACAAAGCTTTATTACTGTCATTGAATTATTCTGCTGGTACACCAACAATACTGTTGGGTCTGTGTATTTCCTGTCTTACTCCACAGTGTGTCTATTTGTAGTTGTAATCCAATCTAATGAAGGCGAAACAAGTTTTATTGCACAAGACATTTGTTGATGATGGGGTGTGATATTAGGCGTGAACTACTACAAGACACAACATGTCACTCTTTTGTATTCTTACGTGGAAGTTTATTACCCATAACCAAAATAAATACACCACatatcctcttcctctttcatgATGATGACTTAGCCTTTATGGTAACGGTGACAGGCCTGCACTggccacaacccccccccccccctttgtcaAAGACAATGTAAATAAAATGGCTTTATGAACT

Function

NR:

description
receptor-transporting protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611716.2 True 2113 mRNA 0.43 2 8187929 8191228

Neighbor

gene id symbol gene type direction distance location
LOC100135997 LOC100135997 coding upstream 3898 8117910 ~ 8197019 (+)
LOC110529397 LOC106574172 coding upstream 25542 8152073 ~ 8162387 (+)
nmur1a LOC106574171 coding upstream 101959 8048995 ~ 8085970 (+)
LOC118966768 NA coding upstream 235041 7952793 ~ 7952888 (+)
LOC110528925 hykk coding upstream 252712 7900761 ~ 7935217 (+)
LOC110529566 LOC106574176 coding downstream 1454 8192682 ~ 8199666 (+)
LOC110497697 LOC106574176 coding downstream 18105 8209333 ~ 8213887 (+)
LOC118943893 LOC106574176 coding downstream 33137 8224365 ~ 8225267 (+)
LOC110501328 LOC106574178 coding downstream 37961 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 coding downstream 64645 8255142 ~ 8271732 (+)
G6912 NA non-coding upstream 40452 8145046 ~ 8147477 (+)
G6821 NA non-coding upstream 100184 8086029 ~ 8087745 (+)
G6844 NA non-coding upstream 111331 8076370 ~ 8076598 (+)
G6838 NA non-coding upstream 119667 8067935 ~ 8068262 (+)
G6946 LOC106574176 non-coding downstream 18234 8209462 ~ 8225068 (+)
G6964 NA non-coding downstream 49207 8240435 ~ 8240724 (+)
G6967 NA non-coding downstream 52055 8243283 ~ 8249184 (+)
G6969 NA non-coding downstream 61234 8252462 ~ 8252670 (+)
G6978 NA non-coding downstream 72422 8263650 ~ 8263921 (+)
G6807 NA other upstream 150775 8036617 ~ 8037154 (+)
G6518 NA other upstream 302022 7885391 ~ 7885907 (+)
G6434 NA other upstream 462320 7725046 ~ 7725609 (+)
G5581 NA other upstream 1376308 6810994 ~ 6811621 (+)
G5276 NA other upstream 1669740 6517482 ~ 6518189 (+)
LOC118966784 LOC106574127 other downstream 1267720 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1792547 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1950016 10140230 ~ 10162948 (+)

Expression


Co-expression Network