LOC110529566 (LOC106574176)


Basic Information

Item Value
gene id LOC110529566
gene name LOC106574176
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8192682 ~ 8199666 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611929.2
GTACAATTTGTTCCAGCTGGTGAAGAGGTGCTATCGATGGGTGTTAGGAAACAAAGCTTTGCTCTGAACAATTCTTCAGCCAGAGGATCGAAACGGTCAAGAACTTGTAGCTTGCTGCTTAATGGCAGCCAAGGATTTTTCCAAAATGGAGTCTCAACGATGGTGGGTCAGTTCCCACCAGGTTCTGTTCATCATCTGCTGTATCATGGTACAGGCGCCATGCCTGAGATGTAAGATAGTGGTGAACTGcaccaaccccaacaccatatcccTTCTGGCCGCCCTGGAGAACGTCATGACATTGTACTCCATACGACCTGTCATGAACCTCTCAACCCCCACCAACATCAGCATGTACTTCACTCTCTACGGCATCCTGGGTGTGGAGGAAAAAGCACAACTGTTGTATACCTACATTTGGCTGGTGAAGGAATGGGAGAATGAATTTTTCAGCTGGGACCCAGTCCAATGCGGCTCTGCCAATATTTCTCTCCCCAGGGAAAGGTTCTGGTCACCAGATGTGGTAATCAATGAATTTATGGATGAAAACAGAGCTCCCATCGTCCCTTATGTGTACATTAAGCACTCTGGTATAGTGCGAGACGCCAACCCTGTCAGAGTGGTTAGCTCCTGTAACCTGGAGATCTACACCTTCCCCTTTGACGTCCAGAACTGCACCTTCACTTTCAGATCCTACATCCACCACGTGTCGGACATAAGGATTATTTTAGGGAAGAAGGTGGAGGACATCCTGAAACGCTCCATTAGCGTGTTGTCCACTGAAGGGGAGTGGGAGCTGATGGACATCAAATCCAGCAAGTTCAAGTTATCATCATTTGATCAGGGAGAAAGCAACCCCTATGATGAGCTCTGCTTTTACATTATCCTGAGGCGCAGAGCCACCCTCTACGTGGTGAACCTCCTGATCCCCAGCTGCTTCCTCATCACTGTGGATCTCTTCAGCTTCCTGCTGCCTCCCCAAAACGTGGACCGCTCCTCCTTCAAGATGACCCTTATTTTGGGCTACTCAGTCTTCCTACTCATCATAAATAACCTGCTGCCCGTTACAGGAAGCACCATTCCACTGATAAATGTGTTCTTCGCCATCTGCTTGGCTCTGATGGTGGCCAGCCTGCTGGAGACTATTCTCATCACCAACCTCCTGGTCGGCTCCAGTAACTTCCACCCAGTGCCAGGCTGGGTCCGAGTGCTCATCCTGCGCTTCATGGGCACCCTCGTCTGGCTGCCTCAGAAATCCAGAGAGGACAAGGTCATCCTCAATCCAGTTTCAAGAGAAACAGACGTGAAAGTCTGCCCTCTAGTGACGGTGGAGAGACAGGTTCAAACAGGAGAACCAGGTAAGATGTGGGCTGAGGCAGACGATCCAGCCCTGGCGGAGCTGAGGAAGCTGGGCAATGAGCTCCAGTCCATCCGCCTCCAGGTGGCCCAGCATGTGGACGGGAACCAGATCTCCCAGGACTGGATGCAGGTGGGCTACATCCTCGACCGGCTGCTGTTTGGCGTCTACTGCATCTTCATCACCTTCAGCTTCATCGTCATCCTCAGCATCTGGAGTAATTCGTACaaacagtgatgtactggttaaaaaaaaataggtGGTTAAACGCCATTCGCTGTGAATAGAGAAATGCTCCTGATATGTTCTTCACATTTTTCCACGATAGGTGGCTAAATGTTTGTGTAAAATACAAAATGTGTGGAAAGAGTgcttaccctccactacaccaccgtGTACAAGACCTAAGAGTCTCCCATGTTGTCAACTGCTGTTGAGATTTAAAAACAATTACCTTAAAATTAGCATAACTTCAACGATCGCTTGTTTGATCTTCTGGCTGTGTGTGActtatatattactatattagattacatttatttttctttgacAAATAAACATAC

Function

NR:

description
5-hydroxytryptamine receptor 3A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611929.2 True 1920 mRNA 0.48 10 8192682 8199666

Neighbor

gene id symbol gene type direction distance location
LOC110529481 LOC106574173 coding upstream 1454 8187929 ~ 8191228 (+)
LOC100135997 LOC100135997 coding upstream 8651 8117910 ~ 8197019 (+)
LOC110529397 LOC106574172 coding upstream 30295 8152073 ~ 8162387 (+)
nmur1a LOC106574171 coding upstream 106712 8048995 ~ 8085970 (+)
LOC118966768 NA coding upstream 239794 7952793 ~ 7952888 (+)
LOC110497697 LOC106574176 coding downstream 9667 8209333 ~ 8213887 (+)
LOC118943893 LOC106574176 coding downstream 24699 8224365 ~ 8225267 (+)
LOC110501328 LOC106574178 coding downstream 29523 8229189 ~ 8231566 (+)
LOC110505168 LOC106574179 coding downstream 56207 8255142 ~ 8271732 (+)
LOC110529807 pfn2 coding downstream 286988 8486654 ~ 8494344 (+)
G6912 NA non-coding upstream 45205 8145046 ~ 8147477 (+)
G6821 NA non-coding upstream 104937 8086029 ~ 8087745 (+)
G6844 NA non-coding upstream 116084 8076370 ~ 8076598 (+)
G6838 NA non-coding upstream 124420 8067935 ~ 8068262 (+)
G6946 LOC106574176 non-coding downstream 9796 8209462 ~ 8225068 (+)
G6964 NA non-coding downstream 40769 8240435 ~ 8240724 (+)
G6967 NA non-coding downstream 43617 8243283 ~ 8249184 (+)
G6969 NA non-coding downstream 52796 8252462 ~ 8252670 (+)
G6978 NA non-coding downstream 63984 8263650 ~ 8263921 (+)
G6807 NA other upstream 155528 8036617 ~ 8037154 (+)
G6518 NA other upstream 306775 7885391 ~ 7885907 (+)
G6434 NA other upstream 467073 7725046 ~ 7725609 (+)
G5581 NA other upstream 1381061 6810994 ~ 6811621 (+)
G5276 NA other upstream 1674493 6517482 ~ 6518189 (+)
LOC118966784 LOC106574127 other downstream 1259282 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1784109 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1941578 10140230 ~ 10162948 (+)

Expression


Co-expression Network