LOC110501328 (LOC106574178)


Basic Information

Item Value
gene id LOC110501328
gene name LOC106574178
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8229189 ~ 8231566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989290.1
ATGGATGAAAACAGATCTCCTATCATCCCTTATGTGTACATTAAGCACACTGGTAAAGTGCGAGAAGCCAAACCTGTCAGAGTGGTTAGCTCCTGTAACCTGGACATCTACACCTTCCCCTTTGACGTCCAGAACTGCACCTTCACCTTCAACTCCTACATCCACCGCGTGTCGGACATAAGGATTATTTTAGGGAAGAAGGTGGAGGACATCCTGAAACGCTCCATTAGCGTGTTGTCCACCGAAGGGGAGTGGGAGCTGATGGACATCAAATCCAGGAGGTTCAATTTATCAGCACCCGATCAGGGAGAAAGCAACCCATATGATGAGCTCGGCTTCTACATTGTCCTGAGGCGCAGAGCAACCCTCTATGTGGTGAACCTCCTGATCCCCAGCTTCTTTCTCATCACTGTGGATCTCTTCAGCTTCCTGCTGCCTCCCCAGAACGTGGACCGCTCCTCCTTCAAGATGAGCCTTATTTTTGGCTACTCCGTCTTCCTGCTCATCGTGAATGACCTGCTGCCAGTCACAGGAAGCACCATACCATTGATAAATGTGTTCTTCGCCATCTGCTTGGCTCTGATGGTGGCCAGCCTGCTGGAGACTATTCTCATCACCAACCTCCTGGTCGGCTCCAGTAACTTCCACCCAGTGCCTGGCTGGGTCCGAGTGCTCGTCCTGCGCTTCATGGGCACCCTCGTCTGGCTGCCTCAGAAATCCGGAGAGGACAAGATCATCCTCAATCCAGTTGCAGGAGAAACAGACGTGAAAGTCTGCCCTCTAGTGACGGTGGAGAGACAGGTTCAAACAGGAGAACCAGGTAAGATGTGGGCAGAGGCAGGCGATCCAGCCCTGGCGGAGCTGAGGAATCTGGGCAATGAGCTCCAGTCCATCCGCCTCCAGGTGGCCCAGCATGTGGACGGGAACCAGATCTCCCAGGACTGGATGCAGGTGGGCTACATCCTCGACCGGCTGCTGTTTGGTGTCTACTGCATCTTCATCACCTTCAGCTTCATCGTCATCATCAGCATCTGGAGTAATTCGTGCAACCAGTGA
>TU8580
TACACCTTCCCCTTTGACGTCCAGAACTGCACCTTCACCTTCAACTCCTACATCCACCGCGTGTCGGACATAAGGATTATTTTAGGGAAGAAGGTGGAGGACATCCTGAAACGCTCCATTAGCGTGTTGTCCACCGAAGGGGAGTGGGAGCTGATGGACATCAAATCCAGGAGGTTCAATTTATCAGCACCCGATCAGGGAGAAAGCAACCCATATGATGAGCTCGGCTTCTACATTGTCCTGAGGCGCAGAGCAACCCTCTATGTGGTGAACCTCCTGATCCCCAGCTTCTTTCTCATCACTGTGGATCTCTTCAGCTTCCTGCTGCCTCCCCAGAACGTGGACCGCTCCTCCTTCAAGATGAGCCTTATTTTTGGCTACTCCGTCTTCCTGCTCATCGTGAATGACCTGCTGCC

Function

NR:

description
5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989290.1 False 1056 mRNA 0.53 5 8229189 8231566
TU8580 True 416 TUCP 0.45 3 8229297 8230235

Neighbor

gene id symbol gene type direction distance location
LOC118943893 LOC106574176 coding upstream 3922 8224365 ~ 8225267 (+)
LOC110497697 LOC106574176 coding upstream 15302 8209333 ~ 8213887 (+)
LOC110529566 LOC106574176 coding upstream 29523 8192682 ~ 8199666 (+)
LOC110529481 LOC106574173 coding upstream 37961 8187929 ~ 8191228 (+)
LOC100135997 LOC100135997 coding upstream 45158 8117910 ~ 8197019 (+)
LOC110505168 LOC106574179 coding downstream 24307 8255142 ~ 8271732 (+)
LOC110529807 pfn2 coding downstream 255088 8486654 ~ 8494344 (+)
LOC110515166 ankub1 coding downstream 371159 8602725 ~ 8612667 (+)
LOC110532690 NA coding downstream 393320 8624886 ~ 8634174 (+)
LOC110519734 ankub1 coding downstream 435603 8667169 ~ 8693760 (+)
G6946 LOC106574176 non-coding upstream 4121 8209462 ~ 8225068 (+)
G6912 NA non-coding upstream 81712 8145046 ~ 8147477 (+)
G6821 NA non-coding upstream 141444 8086029 ~ 8087745 (+)
G6844 NA non-coding upstream 152591 8076370 ~ 8076598 (+)
G6964 NA non-coding downstream 8869 8240435 ~ 8240724 (+)
G6967 NA non-coding downstream 11717 8243283 ~ 8249184 (+)
G6969 NA non-coding downstream 20896 8252462 ~ 8252670 (+)
G6978 NA non-coding downstream 32084 8263650 ~ 8263921 (+)
G6983 NA non-coding downstream 41370 8272936 ~ 8274241 (+)
G6807 NA other upstream 192035 8036617 ~ 8037154 (+)
G6518 NA other upstream 343282 7885391 ~ 7885907 (+)
G6434 NA other upstream 503580 7725046 ~ 7725609 (+)
G5581 NA other upstream 1417568 6810994 ~ 6811621 (+)
G5276 NA other upstream 1711000 6517482 ~ 6518189 (+)
LOC118966784 LOC106574127 other downstream 1227382 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1752209 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1909678 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 3245098 11433102 ~ 11514427 (+)

Expression


Co-expression Network