LOC110505168 (LOC106574179)


Basic Information

Item Value
gene id LOC110505168
gene name LOC106574179
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8255142 ~ 8271732 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989291.1
ATGTGGGCAGAGGCAGGCGATCCAGCCCTGGCGGAGCTGAGGAATCTGGGCAATGAGCTCCAGTCCATCCGCCTCCAGGTGGCCCAGCATGTGGACGGGAACCAGATCTCCCAGGACTGGATGCAGGTGGGCTACATCCTCGACCGGCTGCTGTTTGGCGTCTACTGCATCTTCATCACCTTCAGCTTCCTCGTCATCCTCAGCATCTGGATATATTTATGCCAGTGCGATTTGACCTGTAAAGAGGGTCACAGCGGTCCAACCTACGAGTCGATGCAGACTGTGTTTAACCGCATATCCTTCAGACCGGCAGTCAACCTAAGCAATCCCACCATAGCAAACATCTCCTTCACCCTGTATGCTGTCCTGGGCGTGAATGAGAAGACCCAGATCCTCACTACTTTCCTGTGGTTGAGATTGTACTGGCACCATCAGTTCCTGGTTTGGGACTCTGATGCTTGTGGCGGAGTCACCAGGATTTCTCTGCCAGTCAAAGAGCTCTGGGTGCCTGACATCATCGTGTATGAGTTtgtggACGACGACGTGTCACAGCAATGCCCCTACGTCTACGTCAACCACACAGGCCACATCCGCTGGGACAGGATGCTGCGCCTGGTCAGCGCCTGCAACCTGGAAATCTTCAGCTTCCCCTTCGATGTGCAGAACTGCTCGTTTACCTTCGGCTCCTACATGCACACCAtAAAGGATGTGAGGTTGACTCCAGCCCTGTCCTTCGAGGAGATGTCGGGGAACTCGAAACAGTACCTGGAGGCTAGTGGGGAGTGGGAGCTGGTCAACATCTATGGAGAGGCGTCTGTCCTCAAGTTTGGCATCGACGAATGGGACATCATCACTTTCTggGTGGTGATAAAGCGCAGGCCAGTGCTCTACGTGGTCAACCTGCTCATCCCCAGTTCCTTCCTCATGCTCATCGACATCCTCTCCTTCTACCTGCCCCCTCACAGCGTGGACCGCGCCTCCTTCAAGATGACCCTTATTTTGGGCTACACCGTCTTCCTGCTCATCATGAACGACCTGCTGCCCAGCACGGCCAACGGCACCCCCCTCATAGGAATTTACTTTTCAGTGTGTCTGGCTCTCATGGTCATCAGCCTGTTGGAGACAGTCATCATCACTAATGTGCTCCATTCCAACTCCAAGAAGTACCGCGAGGTGCCCCACTGGGTCCGTGTGGTCATCCTGAAGCACATCGCCCGTATGATCTGCTACCAGTGGCCCGAGGAGCTTGTTCAACCCTCAGCCTCCAGAGGATCCACCCAGGATGACAAGGCAGACAGACCAAACCCCACAAGCCCTCCCTGGGTCCTTGCACCAGCCAACCCTGTGCACATCCCTGCCCAGCACACCACAAGCACCATTGGTCCTGGGGTGGTGTCCTCTGTGCCTGAGCTGCGTCAGATCTGCCAGGACCTGAGTGACTTGCGTGCCCACTTAACGTCGATGCAGAAGGAGGGCGTGCTTCAGGAGCAGTGGTGCCACGTAGGCTACGTACTGGACTTCCTGCTCTTCCGtatctacctcctcctcatctcctgctACGCCATGGTCATCATCTGTATGTGGTGCATCTGGATCAACCAATGAGAGACCAAAAGGGCGCATTTGTTTTAGCTTGCCCATTCCATTGGTCTGAAAGTGAAATCTCAGATCACCTCAGGCAGTGGGGCGAGCTAAAACAAATGCAcccagagagagaagaagggggggTAGAAGAGAGTGAGACCAATGTACAGTAAGTAGTACCATAAGTCTCTGAATTTCTTTTGAAATGTAGTTTTCATTTTGTAAAAAATTgagttaaaggtaaaaaaaaaagtgtgttaactaggcaagtcagttaagaacaaattattatattCAATGACTgccccttgttc
>TU8596
CAGGAAGCACCATTCCACTGATAAATGTGTTCTTCGCCATCTGCTTGGCTCTGATGGTGGCCAGCCTGCTGGAGACTATTCTCATCACCAACCTCCTGGTCGGCTCCAGTAACTTCCACCCAGTGCCTGGCTGGGTCCGAGTGCTCGTCCTGCGCTTCATGGGCACCCTCGTCTGGCTGCCTCAGAAATCCAGAGAGGACAAGATCATCCTCAATCCAGTTGCAAGAGAAACAGACGTGAAAGTCTGCCCTCTAGTGACGGTGGAGAGACAGGTTCAAACAGGAGAACCAGGTAAGATGTGG

Function

NR:

description
5-hydroxytryptamine receptor 3A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989291.1 False 1898 mRNA 0.53 9 8255873 8271732
TU8596 True 302 TUCP 0.40 3 8255142 8255878

Neighbor

gene id symbol gene type direction distance location
LOC110501328 LOC106574178 coding upstream 24307 8229189 ~ 8231566 (+)
LOC118943893 LOC106574176 coding upstream 30606 8224365 ~ 8225267 (+)
LOC110497697 LOC106574176 coding upstream 41986 8209333 ~ 8213887 (+)
LOC110529566 LOC106574176 coding upstream 56207 8192682 ~ 8199666 (+)
LOC110529481 LOC106574173 coding upstream 64645 8187929 ~ 8191228 (+)
LOC110529807 pfn2 coding downstream 214922 8486654 ~ 8494344 (+)
LOC110515166 ankub1 coding downstream 330993 8602725 ~ 8612667 (+)
LOC110532690 NA coding downstream 353154 8624886 ~ 8634174 (+)
LOC110519734 ankub1 coding downstream 395437 8667169 ~ 8693760 (+)
LOC118936489 ankub1 coding downstream 449838 8721570 ~ 8747704 (+)
G6969 NA non-coding upstream 3203 8252462 ~ 8252670 (+)
G6967 NA non-coding upstream 6689 8243283 ~ 8249184 (+)
G6964 NA non-coding upstream 15149 8240435 ~ 8240724 (+)
G6946 LOC106574176 non-coding upstream 30805 8209462 ~ 8225068 (+)
LOC100135997 LOC100135997 non-coding upstream 58854 8117910 ~ 8197019 (+)
G6983 NA non-coding downstream 1204 8272936 ~ 8274241 (+)
G6985 NA non-coding downstream 2934 8274666 ~ 8275427 (+)
G7001 NA non-coding downstream 34033 8305765 ~ 8306401 (+)
G7009 tsc22d2 non-coding downstream 99442 8371174 ~ 8373438 (+)
G7066 NA non-coding downstream 154501 8426233 ~ 8426444 (+)
G6807 NA other upstream 218719 8036617 ~ 8037154 (+)
G6518 NA other upstream 369966 7885391 ~ 7885907 (+)
G6434 NA other upstream 530264 7725046 ~ 7725609 (+)
G5581 NA other upstream 1444252 6810994 ~ 6811621 (+)
LOC118966784 LOC106574127 other downstream 1187216 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1712043 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1869512 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 3204932 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4966881 13238613 ~ 13295452 (+)
G6978 NA non-coding downstream 7772 8263650 ~ 8263921 (+)

Expression


Co-expression Network