LOC110515166 (ankub1)


Basic Information

Item Value
gene id LOC110515166
gene name ankub1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8602725 ~ 8612667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989292.1
ATGGTATGGGACACTCAATTACGGCTCCTTGTGTTTCCAATCTTCTTCCTCTGGCAGGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCTGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCAAGCGAGGCCAGCTCACCATCCTCAAACTCTTTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCGGGATCCCCAGGGTCGTGACCCCCTGAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTACATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGTTCCGCACCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCTACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatgtGGAGGGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGTGCCTTCACACAGAGACCATGGTTGCAGCAGCTGAATGTAGCGCGGACTCTGTCCAGGAGGAGTGCTCAGCACATTGGGTAGACACCAGGATCCTGGTCATTAGGCAGATTAAACATACTGAAACAAGGAGGGACAACCTGGAATTGTCCAAAAAGGAACTCTTAtttgagtttttatttttattttttacagtgaaCAAGATGAGACTTTGGAACGGATGATGCCTGAAACAATGCGGACGACTTAGAATTTTGTTCCTTTGGATGAGGCTTATAGATATAGTCAGTACTGTGTTTGATTTGTGTGCAGAAAGTTTACAACGGCAGGCAGTGGATTCTCAGTCATTCCTCTCAAGTAACAAAAAACGTATCATATTTCACTGGCTATTTGTAGTAGCCAAATGTGAAtggaattattattattctagAATCATTCAGTTGACTGAATGTGACTGTGGTTGTGCTGTATGTGACTATGTGGTTGTACTGAATGTGACTATGTGATTGTACTGAatgtggttgtactgtacgtGATTGTAAGTGTTTGACATGGGTCTAATtgaggccccccccccccacacttaaCACTAGTTTTTATCCATAGAAATCCTCACTTGCTGATGAAGACCTAGAGTGGTTGAAATCAATGTAAAATACAGTATGAACACTGCTGCCTTAAAACTCTTTTATTAAGATGTGGATCATTATTGCTCATTTAAATGAGTCTGTGCAGTGTCAAAATAATACACCTGATACATAAGGGGGGAAAAATGCTAAAAATACCACAAGACATGAAATAATGGCATTATGGGAAAATAATACATACTGTATTTCACAGAGTATTTGACAAACTCTTTATTTACGTTACAAAACTGACAACTACTGTGACGATGTGTTAGCACAGCATGTGTCATCATTCCCCTGCAGTGTGTGGATTTACACAGCAACATAGCAGACAGCTtaaatagtttattttttatttaacctttatttcactagacaagtcggttaagaacaaattcttatttacaatgatggccaaacccggacgacgctgggccaattatgcggcacaatatgggactcccaatcacttggGAGTGGGAAGGATACCAAATCCAATATCACACACTTCTTCCTTAGTATTCTGAGAACTGTCAGATAGCTGTGAGAGCTATGAGTGGATCGTGGACCCATGCATAAATGATAactttgctgtaactcagtgggGCAAGTAGAACGTCCGGGTTAGTGTATGTGCATTATCTGGACAGTTGATCGTCTTTGTCTCAAAGCCTTTCCATTTCTGGGGTATTGAAGAAGCTTCTGATCTCAACCTTCTTGACAGGTAAGAAACACTTGGTTAGTGTATGTGTCTTATCCAATGGGTTGTCAGGTGAACGTTGAAGATGCTTCTTGGAGGTGATCTAATGATGTCATTGAATCGCTGTCATTGAGTTGCTCACTGGACAAGACAATTATTCACTGAAAATTAAatctgtctttcatttca
>TU9077
gaaCAAGATGAGACTTTGGAACGGATGATGCCTGAAACAATGCGGACGACTTAGAATTTTGTTCCTTTGGATGAGGCTTATAGATATAGTCAGTACTGTGTTTGATTTGTGTGCAGAAAGTTTACAACGGCAGGCAGTGGATTCTCAGTCATTCCTCTCAAGTAACAAAAAACGTATCATATTTCACTGGCTATTTGTAGTAGCCAAATGTGAAtggaattattattattctagAATCATTCAGTTGACTGAATGTGACTGTGGTTGTGCTGTATGTGACTATGTGGTTGTACTGAATGTGACTATGTGATTGTACTGAatgtggttgtactgtacgtGATTGTAAGTGTTTGACATGGGTCTAATtgaggcccccccccc

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989292.1 False 2964 mRNA 0.50 5 8602725 8612667
TU9077 True 381 lncRNA 0.52 1 8611349 8611729

Neighbor

gene id symbol gene type direction distance location
LOC110529807 pfn2 coding upstream 108381 8486654 ~ 8494344 (+)
LOC110505168 LOC106574179 coding upstream 330993 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 coding upstream 371159 8229189 ~ 8231566 (+)
LOC118943893 LOC106574176 coding upstream 377458 8224365 ~ 8225267 (+)
LOC110497697 LOC106574176 coding upstream 388838 8209333 ~ 8213887 (+)
LOC110532690 NA coding downstream 12219 8624886 ~ 8634174 (+)
LOC110519734 ankub1 coding downstream 54502 8667169 ~ 8693760 (+)
LOC118936489 ankub1 coding downstream 108903 8721570 ~ 8747704 (+)
LOC110510915 ankub1 coding downstream 152322 8764989 ~ 8771138 (+)
LOC118966266 ankub1 coding downstream 177564 8790231 ~ 8798967 (+)
G7047 NA non-coding upstream 106884 8495735 ~ 8495841 (+)
G7092 NA non-coding upstream 127157 8475364 ~ 8475568 (+)
G7091 NA non-coding upstream 127644 8474845 ~ 8475081 (+)
G7089 NA non-coding upstream 133604 8468705 ~ 8469121 (+)
G7085 NA non-coding upstream 155734 8446355 ~ 8446991 (+)
G7396 NA non-coding downstream 7903 8620570 ~ 8620924 (+)
G7397 NA non-coding downstream 8266 8620933 ~ 8676015 (+)
G7414 NA non-coding downstream 98847 8711514 ~ 8768048 (+)
G7417 NA non-coding downstream 110216 8722883 ~ 8723224 (+)
G7436 NA non-coding downstream 143804 8756471 ~ 8808166 (+)
G6807 NA other upstream 565571 8036617 ~ 8037154 (+)
G6518 NA other upstream 716818 7885391 ~ 7885907 (+)
G6434 NA other upstream 877116 7725046 ~ 7725609 (+)
LOC118966784 LOC106574127 other downstream 846281 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1371108 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1528577 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2863997 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4625946 13238613 ~ 13295452 (+)
G7387 NA non-coding upstream 499 8610502 ~ 8610850 (+)
G7383 NA non-coding upstream 4378 8606748 ~ 8606971 (+)

Expression


Co-expression Network