LOC118966038 (LOC106574155)


Basic Information

Item Value
gene id LOC118966038
gene name LOC106574155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8643996 ~ 8648869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987914.1
CTAGTTTATCTAAAAATATTAAGAAGACATTAAAGGGCTTCACCATTCACCGGCGGAGGTCAGACGTGCAGAGAAGAATGTCTAGCCGTACACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAACTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAATAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAATGTCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACAATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccatctctctaacacCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCATCCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACCTTTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACACTGTGCCATATCCAGGAAGCTCTCCTCTCAGTTTCTCCAGATATTTGCTGAAGAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTCTGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATTCAGCTCAATCAGAGCAAGCCAGATGATAGTGACACAATGAATCAGCTCACGAAGGTCATGGTCAACAAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTATTTTGAGTCCggtaccagcatggccaccagagACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGGTATAGTACAAGTACAGATTTTTCATGAATAACACTGCTTTTGAATGTATGAGATATTATTTGTTTATATAATTCAGTATTTTAGCATTGTATTGCCTTTTTCCAGTTGATATACTGTACTTTAAGATATATAACAGTTTGTTTTAATGTGCCTTTTCCCACCAACCAGGGTTCTAAGAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTTCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCCTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCATTTGTTGTCATATgttgactgttttgctagcacagactgtaaTATGTTCTGCGATTCATCCAcatgcattgaggagtataccacctcagtcacaggCTACATCAATAAGTGGATCGACAACGTCGtgtccacagtgaccgtatgtacatatccccgacagaagccatggattacaggcaacatccacaccgcgctaaaggctagagctgcttctttcaaggagcgggacactaatccagacacttatatgaaatcctgctatgccctcagactaaccatcaaacaggcaaagtgtcacgccctgaccgtagagatctttttaattctctatttggttaggtcagggtgtgactagggtgggcaatctaggTGATGATAAGCCAGTGATATAGAGACATTAGAAAAGGTTTGTTTTCAGTGGtgcaaagtacttaagtaaaaatgatttaaaccgttttgggggtatctgtactttaactatttatatttttgacaacttcagTACATTCATAAAGGACAAAAATGTACTTTTGACTCCATCCACTTTccctgatacccaaaagtacattttgaatgctttgtatgacaggaaaatggtccaattcacacacttatcaagagaacatcccctacctctgatctggcagactcaataaacacaaatgcttagtttataaattatgtctaagtgttggagtgtgcccctggctattctTACATTCAAAAAAAGCAATACAATTGTgttgtctgctttgcttaatttttaaaattatttttacttttgatacttgagaatatttcaaaccaaatacttcccaagtagtattttactgggcaaCTTTCACATTTACTTGAGTCATACTGTTTACAACTGACTGATTGaggactttttccaccactgtttgttttggacatttattttttatcaaatgTATTTGACAGGGACAATCTACTGTATTTCTGTAAATGTGCCAGATTTAGCCAGCTGGCTTTGTGATGTAACAAAGGTAGCTGATGATGTAATGAAAACAGACAGTTAAATATGTGTGTGTAGAACTGTTGCACATTTGCTCTGGAAATGAGGACCAAACCTACTCGTCAAAAGGAGTGAATTGCACCTCCAATTGAAGTCAATAATAAGGTATGGACTCATGCCAATACAGTCATTATTTATATAGCTCTGTAGCTTGCAGTATTTTGAAGGAGATAAGCAAGGGAAAATGATGCTTTGGTTAATATTTCTCACGTGAAAGGAAACATGACCATGCTAACTGAAAAATGGATACATGAATATTGGTCAAATGTACCTACATCTTCTGAAGCTGTGTTGGGCCTACTTGATAATTAAAAAAAAGTCACATAGACGATGTCCATAAATTAGACAACAATACTGAACAGTTGTAGCCCGTTGGTAGTGGTAGGCTTCTGGCTGTGATCTCTGACCACTGTAACAGTGAATAGTGGCAATTTACCCGCGGGGTATAGGCTTGTTTACTAGGCTAACTAGTGCATTGGGGTGGGCTATGTGCAGCATGGGCATACAGGAAACCACTCTAGCCTCTTAACTCACCTTGGCCACGAGCTCTATAGTTTACAGCTATTGCATCACCTACAAAGCATCAACTGAATGTTGAATGTCAGGTATTTTAATTGTCTGTATTGTCTACTTGTTAAATGTTTGTAAAGTCTTcatttgtaattgtttgtaatgtCTTATCAATTGGtgttggaccacaggaagattagCTAACGTTATAGCGTTAGCTAATGGGGACTCTAGTAAAGATTCACAAGACTGTTCACAGATTCACATTGATCACAGAATCGGATTGATAATCTTAATTCGAAGTTTGAGTTTTTTACTGGACAACCAACACTTGACAGATGGGCTAATCCATAGAAAGAAAATGTGATCTTGGATCTTGAACTCCCCTAGCTACATTTCGACTTAATGTTCAATATTACTAGTGGCACTCTGTCCTTACGAACAGTAAATCATTGGGTCTGACTCTTTTGATTTAATGCAATTTCATCATCGATAGTGAAACAACCACCACATAATCGTCAACTCCCCCCTACAAAACATGAATTTATTTGTGGTTTATCCTCTAGCTATTAGGTATTAGGTGTGATCCTGACTTGGAATGGCCACGAAGTTACACATTGTTTTAGGAAACATGAATTTATTTGTGGTTTATCCTCTTTAGCTATTTGGTATTAGGTGTGATCCTGACTTGGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106574155

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987914.1 True 4745 mRNA 0.41 2 8643996 8648869

Neighbor

gene id symbol gene type direction distance location
LOC110530501 LOC106574127 coding downstream 18976 8618780 ~ 8666735 (-)
LOC110508833 rnf13 coding downstream 63406 8495925 ~ 8580590 (-)
LOC110529747 tsc22d2 coding downstream 224946 8330314 ~ 8419050 (-)
LOC110529671 rubcn coding downstream 302909 8274638 ~ 8341087 (-)
LOC118965595 NA coding downstream 461865 8177281 ~ 8182131 (-)
LOC110515173 LOC106574127 coding upstream 8770 8657639 ~ 8665971 (-)
LOC110515722 LOC106574127 coding upstream 9484 8658353 ~ 8707910 (-)
LOC118965988 LOC106574127 coding upstream 51178 8700047 ~ 8707686 (-)
LOC110514907 LOC106574127 coding upstream 77666 8726535 ~ 8734329 (-)
LOC118966070 LOC106574127 coding upstream 102568 8751437 ~ 8761523 (-)
G7476 LOC106574155 non-coding downstream 25759 8617941 ~ 8618237 (-)
G7393 NA non-coding downstream 30452 8613140 ~ 8613544 (-)
G7392 NA non-coding downstream 30910 8611962 ~ 8613086 (-)
G7390 NA non-coding downstream 32219 8611132 ~ 8611777 (-)
G7388 NA non-coding downstream 33197 8610371 ~ 8610799 (-)
G7490 NA non-coding upstream 5894 8654763 ~ 8815172 (-)
G7506 NA non-coding upstream 49242 8698111 ~ 8723332 (-)
G7508 NA non-coding upstream 50525 8699394 ~ 8751286 (-)
G7184 LOC100135997 other downstream 460063 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 604533 8039179 ~ 8039463 (-)
G6706 NA other downstream 758996 7884343 ~ 7885000 (-)
LOC110531419 LOC106574164 other downstream 916465 7704811 ~ 7727531 (-)
G7985 NA other upstream 504401 9153270 ~ 9153947 (-)
G7965 NA other upstream 532586 9181455 ~ 9194911 (-)
G8455 LOC106574127 other upstream 919072 9567941 ~ 9590586 (-)
G10263 NA other upstream 2913868 11562737 ~ 11563125 (-)
G10343 NA other upstream 2996211 11645080 ~ 11645703 (-)

Expression


Co-expression Network