LOC118936489 (ankub1)


Basic Information

Item Value
gene id LOC118936489
gene name ankub1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8721570 ~ 8747704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036987965.1
tagtttcctaggaacgcgaagcgaggcggcccgCGAAGCGAGGCGGCTACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatgtGCAGGGAAGGGATGTGAGGAAGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCCCTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGgggcTAATCTACGGTTAGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCTGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCTATCAAGCGAGGCCAGCTCACCATCCTCAAACTCTTTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCGGGATCCCCAGGGTCGCGACCCCCTCAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCTACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatggGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAATTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGTTAGTCCAAGTTTAAATGACAGCTACGGTGAATATGAATATTTCTCTGGAGGTTTCTTATGAAAGGTGTGAATACTGTCAGAAGAAGCCTCCTATAatcagtggtggtg
>XM_036988014.1
CTTCTTTTTTAAATAGCCTAGCTGCggattgtagcccaataacaaagaatagcctacagtcgggaacgcgaggcaaatctgtcagtgaaaaaacagcaggcagacaaaacaggccttttgcaatatttcaaatacaatcgagGGAAAACACAGATTGAAAAGCAATGACTCTTGCTGAAAAGATAAGACTATGCTGTAgactaccaaaatatttgatcaactcccaaacattgttttacaaaacagagagagggagagataggcttTTGACACGAGCGCATCGACAATCTCCAGCGagtgagctgcgcatcattggGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGGTACCAGCCGAACACCTAGCTGTTTCTACCCGTGCTTGAAAATGCATATCAAACGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGgggcTAATCTACGGTTAGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCTGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCTATCAAGCGAGGCCAGCTCACCATCCTCAAACTCTTTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCGGGATCCCCAGGGTCGCGACCCCCTCAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCTACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatggGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAATTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGTTAGTCCAAGTTTAAATGACAGCTACGGTGAATATGAATATTTCTCTGGAGGTTTCTTATGAAAGGTGTGAATACTGTCAGAAGAAGCCTCCTATAatcagtggtggtg

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
protein ANKUB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036987965.1 False 1811 mRNA 0.59 5 8721570 8747704
XM_036988014.1 True 1868 mRNA 0.56 5 8735589 8747704

Neighbor

gene id symbol gene type direction distance location
LOC110519734 ankub1 coding upstream 27810 8667169 ~ 8693760 (+)
LOC110532690 NA coding upstream 87396 8624886 ~ 8634174 (+)
LOC110515166 ankub1 coding upstream 108903 8602725 ~ 8612667 (+)
LOC110529807 pfn2 coding upstream 227226 8486654 ~ 8494344 (+)
LOC110505168 LOC106574179 coding upstream 449838 8255142 ~ 8271732 (+)
LOC110510915 ankub1 coding downstream 17285 8764989 ~ 8771138 (+)
LOC118966266 ankub1 coding downstream 42527 8790231 ~ 8798967 (+)
LOC118966103 ankub1 coding downstream 51754 8799458 ~ 8851372 (+)
ndufb5 LOC106574141 coding downstream 120406 8868110 ~ 8871284 (+)
usp13 LOC106574137 coding downstream 129887 8877591 ~ 8915400 (+)
G7397 NA non-coding upstream 45555 8620933 ~ 8676015 (+)
G7396 NA non-coding upstream 100646 8620570 ~ 8620924 (+)
G7387 NA non-coding upstream 110720 8610502 ~ 8610850 (+)
G7383 NA non-coding upstream 114599 8606748 ~ 8606971 (+)
G7436 NA non-coding downstream 8767 8756471 ~ 8808166 (+)
G7440 NA non-coding downstream 20820 8768524 ~ 8797364 (+)
G7573 NA non-coding downstream 116477 8864181 ~ 8865177 (+)
G7581 NA non-coding downstream 127077 8874781 ~ 8877527 (+)
LOC110501328 LOC106574178 other upstream 491335 8229189 ~ 8231566 (+)
G6807 NA other upstream 684416 8036617 ~ 8037154 (+)
G6518 NA other upstream 835663 7885391 ~ 7885907 (+)
G6434 NA other upstream 995961 7725046 ~ 7725609 (+)
LOC118966784 LOC106574127 other downstream 711244 9450932 ~ 9460358 (+)
LOC110510920 LOC106574155 other downstream 1236071 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 1393540 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2728960 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4490909 13238613 ~ 13295452 (+)

Expression


Co-expression Network