LOC110514872 (LOC106574127)


Basic Information

Item Value
gene id LOC110514872
gene name LOC106574127
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 8852578 ~ 8860211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989296.1
ATGTCCCTGGAGGACATAGAACAACAAGACTATGATGTTTCTGACACTGAGACAGTCAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtggtggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTGTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGAAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaggaagaagtgCAGGAATCACAACTTAAATTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGGTATGTTCTTAAAGGGAAATTtaacaacttcatattcatctccAGCATCACCATATGTGAAAATTACACATTTCCATGctttgtagtaaaaaaaatatagaggGACGTAACTGTTTCCAATAGTGCTGAgaaattagtgctttttgaggttggtttggtttccattcaaatatttaaaaaataatcacggttttGGATTTCAATACTTTTTTTAGACATTGAATGCACTATGGATTATgtgtgttgaatgctgtaacaacacataataaaacaatgaataaaagtcccatgatggtagtgactgtccattactgttTATGACTTATCAACCATCATTTACTTTCtcatataaaatatttatttgatgactttattatttcattctaaGTCATCAACTCATCTCTATGGAGCTGCTGCTTatcctgtctgacaaaatcactattttagtagttcttctaaGTAAATAAGACCTACTTTTATGACCGCTGAACACCAActgtcaatcacttagatcatgtatttccaGGTAGAGAATCCTCGCAACGCAACTGCTTTTTATCTCTTTCATGCATTCTCTCGTCTCTCCGTCTCAGTCAATGAGGTTTCCGTATCTGCTCCACACAGAGTGGACAAGTAAGTGggcgtgcaatggattatggGAATTAATTGCCATATTTTctgtgctaaactatgtagaatattggcctgttggaaactacaactccctactacattgcatagttcgtgcttgatctgatttatctctacagaaactgAGCATCGAgctcacagaagaagaaaaaaattaactatatggaattcaaataattgagccgacgtcggtcaattagttgtttaaaaaccgaaaaataacaaaaatgttggTTAAATGCTCAGCTCTAGATTCTAATGACATCATCAGTGTGCAtcgtgtgattttaaccaattatgagtaggcattgcctactaattggttgatgatgtcatagaaaacacttatcttcctctatcttttttactacaaaacatagaaatgcccgtttttcacatatgctgatgttggggtggtgctggagatgatgaatatgaagttgaaacatTTAGAAATTTCCCTTTAACATTTCTTCAAACTGCCTTGTATTTATGATTGTCCTTGAAGTTATTAGAAGTTACATTATTTGAAGTTTATAGCAATTTGGATTTTTGTAGAGGATAGATGTTGCCAGGATATATAGATATCTACAGGCCAGTTTCAATACAAATGACTTATACAAAATAAATTTTATTGGGCTTTAGAAATTAAGCAGTTAGGCTGACATCACACTAAGGTTTTTTCTCAGAGAAACAGCAGCGTTTTCCTCATTGTTTTCAATGGTGCAGatgtatttgacacactgaatgtgCATCACAGCCTTACATATTATTTGTTTGACTGTGATGATTTCTGCTGTTTTTTTTTCCCAAggactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGATGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAATGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGTCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCAAGTCAAACCTCTCTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAAAGCATGGTGAGAGACCTGGCTGCTAAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACGAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGAGGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAATATTAGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCTAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAAACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGTGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAAGACTGCAATGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagaaatttgTAGAGGGTGTTCTGGCTCAGCTTGGGGATATTGCCCATTCCAGGGCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGAAACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCATCAGCGGAGGTCAGACATGCTGAGCAGAATGTCTAGTCATATACCCACAGAGGACTCTGGACATCTTGGGACTAAGGAGCACATTTGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGGCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGGCATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACGTTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACATCTACAACAGTCTGCAAAGTAAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTAGACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTATTCTTCACGCTCTTCCATCTCTCTAACACCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCCTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgacGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCACATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTATTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGTATAGTACACATACATCTTTCATGAATAACACTGCTGTTGACCTTTTATATGATTCTTTGTGTCATGGCATTGCACTGCTTCTTTGCAGTTGATATGCTGTACTTTAAGATATCGaaaacatttcagtttgttttaATGTGCCTTTTCCCACCAACCAGGGTTCCAAGAAAGTTAGAAAGGACCACTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCAGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCCCATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAACAACGAGAGCATTCATTTGTTCAGATGAGAATCtaatcgtattggtcacatacgccgAAAACAACTGTGAGATGCTTTAttacgagcccattcccaacaatgcagagttaaaaagtaagaaaatattttctaaatagtaacacaataacaataacaaggctatatacaaggagtaccagtaccgagtcaatgtgcatgggtgcgaggt

Function

NR:

description
uncharacterized protein LOC110529913 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989296.1 True 6443 mRNA 0.43 6 8852578 8860211
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118966084 LOC106574127 coding downstream 9528 8834722 ~ 8843050 (-)
LOC110529913 LOC106574127 coding downstream 27972 8811586 ~ 8824606 (-)
LOC118966096 LOC106574127 coding downstream 43674 8803089 ~ 8822710 (-)
LOC118966070 LOC106574127 coding downstream 91055 8751437 ~ 8761523 (-)
LOC110514907 LOC106574127 coding downstream 118249 8726535 ~ 8734329 (-)
LOC110531731 LOC106613497 coding upstream 3977 8864188 ~ 8867895 (-)
pex5la LOC106574138 coding upstream 57657 8917868 ~ 9098569 (-)
LOC110531326 NA coding upstream 350285 9210496 ~ 9224400 (-)
htr2b htr2b coding upstream 395367 9255578 ~ 9273857 (-)
LOC110530621 LOC106574130 coding upstream 449142 9309353 ~ 9384061 (-)
G7559 NA non-coding downstream 6155 8830513 ~ 8846423 (-)
G7546 LOC106574127 non-coding downstream 32195 8805981 ~ 8820383 (-)
G7539 NA non-coding downstream 52420 8793968 ~ 8800158 (-)
G7572 NA non-coding upstream 2940 8863151 ~ 8863564 (-)
G7790 NA non-coding upstream 7901 8868112 ~ 8868396 (-)
G7788 LOC106574141 non-coding upstream 8462 8868673 ~ 8871275 (-)
G7794 NA non-coding upstream 15485 8875696 ~ 8878223 (-)
LOC110529747 tsc22d2 other downstream 477014 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 668645 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 813115 8039179 ~ 8039463 (-)
G6706 NA other downstream 967578 7884343 ~ 7885000 (-)
LOC110531419 LOC106574164 other downstream 1125047 7704811 ~ 7727531 (-)
G7985 NA other upstream 293059 9153270 ~ 9153947 (-)
G7965 NA other upstream 321244 9181455 ~ 9194911 (-)
G8455 LOC106574127 other upstream 707730 9567941 ~ 9590586 (-)
G10263 NA other upstream 2702526 11562737 ~ 11563125 (-)
G10343 NA other upstream 2784869 11645080 ~ 11645703 (-)

Expression

LOC110514872(LOC106574127) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.3.
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LOC110514872(LOC106574127) Expression in each Bioproject

Bar chart with 17 bars.
LOC110514872(LOC106574127) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6.
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Co-expression Network