LOC110531326


Basic Information

Item Value
gene id LOC110531326
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9210496 ~ 9224400 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002474663.2
AGAGGGATCCCTTCCTCTGCACTAGCAGCGTCAcctgaaaaacaacaacatttaactGTTATCTACCCTATTTACCACCAAGGACGTACATGGAAAGTGGAATGaaaaaaaatacattttttgaagtgaccccaaacttttgaatggtattgGATATACTGAGAGCTGTTGCAGCAATTCAGGAGCCAAGTAGAGAGGAGGCTCGTCAAGAGGGGGCACTTGAAGAAGAGGCTCAGAAGAGTAAAGATCTACAGTATGTTAAAGCTAAGTATGTTAAGTACAATTTCACCAATCTGAAATGGTGGCAGCATCTCACACTATGCACTGGGATCTGTGCCTCAAATTCAAAGCACACTGCACAACATGGCCTGATAGTAGCCTTCACACTGGGCGATTTCACAAGCCGATTGTTTACACTCGTGAAATAAACACTCGAGCCCCCTGCCTTCCTTCTCTACCTAAATTCTGTGTTTACGATAGCTAAAAAGACATTGGTAGAAGTTGAAGGCCATTATCATAACGTTGTTGACCCTCTCATATTGTGAGCAAGGGAGCCTTGACCTCCTCATATGGTGTCCTGATGACAAgcaatctagaaaaaaaatcggTATGCTGTGACTCGTGGCAA
>XR_005053569.1
CCCGTCTTCAGAGGGATCCCTTCCTCTGCACTAGCAGCGTCAcctgaaaaacaacaacatttaactGTTATCTACCCTATTTACCACCAAGGACGTACATGGAAAGTGGAATGGCTTGTCTGCAGAATGGACAACTGAAGAGAGATATGTCGCACGTGAGGGAAACAACTCTGTCTCTACACCTTCTGAAGTTTCTGTCCTCCCAAACCTAGACTCTGGTCCACCAACTAACTTTGCCAGTCAAAAGGATCCAGGGTCAAAGAGAAACATCACAGTCCGTTTAGGTGTGCATGTGGCACTCTTTGGTCCAAGAGAATTTATTGTCCCTGAGTTACTTCTTGCCCTATACAAAGAGGTTAGTTCT
>TU9754
cagatctacagTTGTATTCAAGTTTCACTTTGCACAGACCTTGGCGAAACATGTCAAATATTAGTTAGTAATTGCATtgagttcttggggaccttcaatgctgcagacatgttttggtacctttccctaGATCTGTGTGTAAGggatctcatcctcctcttctgaggaggagtagcgagaaggatcggaggaccaaaacgcagcatggtaagtgtccataatttaATGAAGCAaaaaatgaacactgaacaaaaacaacaaacgaacagtcccgtaaggtgaattacaaaacactaaacaggaaataaacacccacaaaacccaggtggaaaagggctacctaagtatgattctcaatcagagacaactaacgacacctgcctctgattgagaaccatactaggccgaacacaaaaaccaacatagaaaaaccaacatagactgcccaccccaactcacgccctgaccatacaaaaacaaagacaaaacaaaggaactaaggtcagaacgtgacactgtgcCTCCCCACAATctcgtctcggagctctacggacaattccttcaacctcatggcttggtttttgctctgacattcactgtcaactgtgggaccttatatagacaggtgtgtgccattccaaatcatgtccaatcaattgaatgtacctccaatcatgttgtagaaacatcccaatgttgatgatcaatgtaaacacaatttatctgagctcaatttcgagtctcatagcgaagggtctgtaattaaggtatttatgtttttattgttaatacatttgcaaaaatgtctaaaaaacatttttcgctttgggtattgtgtgtagattgatgaggaatttttaGAATAAGAATAAGGCTGCAAACGAAACAAACCTGGGCAGAGGAACATACCGGAAGTCAACTACTATAGTGGATGACCCTAGTGAAACTGCAATAAAAGGCCCCTGAAGCAATAATGTCGTTTTACTCCATTGGTTCAATAACAAGCAGTGGCTTCAAAACTATAAATGAATTGTATTAAAACAGTGAATGAGGCGTACAAGAAATATAATGTAGCAATACATATACAAACTATATACGGTGCAATTATACAATCCTTTAGTTTCAAATCTAAATACAAGTTCAAGTAAACCCATAACCCATTGGATTATGGTTGGATTAGTGCAACTGCTATTGTCATTACACAAAAACAAATGTTGGGTTAAAAAAATTGGGTTGTTGATTTTGAGTCATTGAGCTTTGATCCACTgggtcagatcagaagactggagaTGTGGCTTTGTGGGGAActggctttcagatagttatttttggccacctgtgagagtaaatgtcattcctattattctgttctgttgtattgtcaaCACATGTTAAGGTTGGGCACTGACACTTTTGTAGCTTTAATAAGGCTTTAATAAGGCTTACACATGAGTTCCTTAAGTGCCTATGCGTATCGCAATGTTGGGATATTTACCACTTTGTTATATTTAAATAATGTTATACATTTTATATAAAAACATGTCATGTGCAAAAATATTAAGGAAAATTgaaatttgcagtgtacaaacttaacaatggggtggcaggtagcctaatggttagagcgttgggccagtaaccaaaaggttgctggatcgaatccctgagctgacaaggtaaaaaatatgttgttctgcccctgaacaaggcagtttacccactgttccccggttgtacaccagtatttctacttgcacatcctcatctgaacatcaatcactccagtgttaattgctaaattgtaattacttcgccactatggcctatttagtgccttacttcatttgcacatactgtatacatattttccattgtgttattgactgtacgtttgtttatcccatgtgtaactctgtgttgttgtttttgtcatactTGCTTTAACTTGGCCAGGACGCATTTGTAAAAGAGAACTTGTTCTCGactggcctaactggttaaataaaggttaaattaaaaatgtaacatttttaACTGGGCCAGGACGCATTTGTAAAAGAGAACTTGTTCTCGactggcctaactggttaaataaaggttaaattaaaaatgtaaaaggctgtcattgtaaataagaatgtgttcttaaccgacttgcctagttaaataaaggtaaaaaaaaaaagatgaacatgaatgacatttactctcacaaAAGGCCCAAAATAATTGCCCCAATAGGCCACACTTTTCGATTAATTTAACCATCTATTGGGTTTTTATTCACTTTTATGCTTGGTTTACCCATCAGATGGGTGTTATTGGGGGTGTGGCTTTCAGATAAGTATTTTTGGACAGCCATGAAAGTAAACTTCATTCCTGTTCATCGTGatgtttgtacactgcaaatatAAATTTGCCTTAAATATTTTTGCACATTACATATTTTTATATACAATTAATaacattattatttaaatatCATAACAAAGTGGTAACTACCCCAACATTGGGATACACATAGGCACTTGAGGAACTCAACTTGGGTAAACATCATTAAGCTACCGAAGTGTCAGTACTCAACCTTATCATGCGTtgacaatacaacacaacagatTAACCAGAATTACATTTACTCTCACAgctggccaaaaataactatctgaaagccactTCCCTACTAATCCACAtctccagtcttctgatctgacccGGTGGATCAAAGCTCAATAACCCAACTAAGTGTcccaactggctgggtcaaaTATAACTCAACGTTTGTTCTGTCCATTATTTACCCAGGGCTGGGTTGTTATTTTTTATATCCAGGGCTGGGTTGTTGTTTTTATACCCAGGGctgggttgttgtttttttacccagGGCtgggttgttgttttgttttttttacccagggctgggttgttgttgtttttttacccagGGCtgggttgttgttttgttttttttacccagggctgggttgttgttttgttttatccAGGGCTGGGTTGTTGTTTTTATACCCAGGGctgggttgttgtttttttacACAGGGCTgggttgttttttattttttacacaggGCTGGGTTGGTTTTGTTTTTTATCCAGGGCTGGGTTGTTTTTTATATCCAGGACTGGGTTGTTTTtttacccaacattttttttgTGCCGACTGAATTTCTAAGGCACACATTTTGGACTTTCTAATTGTTTCTAACTCTTTCTCATTGCGCCTATTAAATCTATATTGTTTTAAAAAACACTAAAACTCACTAGTTGCTGAATGTTAATTGAAGTCAAGCAaaagaaaataacaaataaacaaatcaatTCTAAAAGCTTTAACAAGAGCAAGGTATTGTGTTTCGTTTGAAAACAGCATCCCATCACACTTACCGAACAGAATGAAGTAAATGGTCATAGTGTTTGTTGGTCACACATTTTTTCATTGTTGTTTTACAATTCAAGATGAGCTCATTGTAACAACAAAAGCAGATATTACATGACAATTATTTAAAGTGACATCATACATGGATGGTTATGTAACAGAGTAACCTCACAAGATACGCATGTACACTAAATGTATTAAGTTGCGTAACTTGAGTTATCGCTAAATTCAAATTGTTCATAATCACAGGCTAATGTATCAACTCTTCTCTGACCGATTGTAAGGCCAATGTGCCAGACATGTGACTTGTACAGACACCAATGTTCCTTGAGACCAACGTTTGAGTATTGTCCACAGTTGGACATGGGAAATCATGACCCACGAGTGTCATCATGACTGTCCTTTTTGGTTACACCACAGTCGGACTCTGCCTGGGGTCCAGAGGACAAAACACCCGTCTTCAGAGGGATCCCTTCCTCTGCACTAGCAGCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002474663.2 False 628 mRNA 0.43 3 9210496 9220180
XR_005053569.1 False 364 mRNA 0.46 3 9214406 9220189
TU9754 True 3883 lncRNA 0.35 2 9220151 9224400

Neighbor

gene id symbol gene type direction distance location
pex5la LOC106574138 coding downstream 111927 8917868 ~ 9098569 (-)
LOC110531731 LOC106613497 coding downstream 342601 8864188 ~ 8867895 (-)
LOC110514872 LOC106574127 coding downstream 350285 8852578 ~ 8860211 (-)
LOC118966084 LOC106574127 coding downstream 367446 8834722 ~ 8843050 (-)
LOC110529913 LOC106574127 coding downstream 385890 8811586 ~ 8824606 (-)
htr2b htr2b coding upstream 35389 9255578 ~ 9273857 (-)
LOC110530621 LOC106574130 coding upstream 89164 9309353 ~ 9384061 (-)
ppp1r2 LOC106574129 coding upstream 171474 9391663 ~ 9425672 (-)
LOC118936718 ankub1 coding upstream 219498 9439687 ~ 9497588 (-)
LOC118966297 ankub1 coding upstream 277324 9497513 ~ 9505345 (-)
G7965 NA non-coding downstream 15585 9181455 ~ 9194911 (-)
G7975 NA non-coding downstream 75184 9135046 ~ 9135312 (-)
G7887 NA non-coding downstream 117940 9024172 ~ 9092556 (-)
G7931 NA non-coding downstream 118892 9090576 ~ 9091604 (-)
G7880 NA non-coding downstream 192830 9016458 ~ 9017666 (-)
G7993 NA non-coding upstream 5325 9225514 ~ 9225885 (-)
G8011 NA non-coding upstream 18233 9238422 ~ 9238655 (-)
G8344 NA non-coding upstream 82280 9302469 ~ 9302708 (-)
G8347 NA non-coding upstream 85449 9305638 ~ 9305975 (-)
G8349 NA non-coding upstream 86803 9306992 ~ 9307243 (-)
G7985 NA other downstream 56549 9153270 ~ 9153947 (-)
LOC110529747 tsc22d2 other downstream 834932 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 1026563 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 1171033 8039179 ~ 8039463 (-)
G8455 LOC106574127 other upstream 347752 9567941 ~ 9590586 (-)
G10263 NA other upstream 2342548 11562737 ~ 11563125 (-)
G10343 NA other upstream 2424891 11645080 ~ 11645703 (-)
G10776 NA other upstream 2635521 11855710 ~ 11856390 (-)
G10792 NA other upstream 2652916 11873105 ~ 11873891 (-)

Expression


Co-expression Network