LOC110531147 (cssa16h2orf72)


Basic Information

Item Value
gene id LOC110531147
gene name cssa16h2orf72
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9218658 ~ 9221408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614393.2
TCTTTCCTTAAGCGCTTTGGAAGTTTCTTATGTACACATTTTATGTTTGTGCATGGAGCTCCGAAGTACAATAGTCCGTGTAAATAAAACGTATCTTTTGACGTTTTTTAAACTCTTCGGAGCGTGGTCTGAGCGGTGTGCGTTGTCTTGTAGCTAAAGAGCAAAGAGGGCGATTTACTATGGCTTGTCCGATTTATCCAAAGGACACACCGCAGCCCACAGAGGACATCGAATTTCAGCAAGTACTGCGTCAAATTGGAGGTAAAGAGAATATATACTTAGTAAGTGATACCGTTAAATCGGATGAGGAGGACGAAGCCAGTGGGATATTAAAGGAGTTCATTCAAGACATGTTTCATAGCGGGCGCACTGAAAACCTTGGCACGAGCCATACCAACAACAACACTAACGGTCAGATTTATTCCTCTCCAAATAGTCAAGGGGATACTACAAGCGAAAATATTGGGACATGCGAAACAGTAAACAACTGCAAGACTTTGCCTCAAGCCCAGGGGAACGAAATACCTCTGTCAACGAGGCCAAAGGATTTAGTATTGAGTGCCAAATCTATGGGAGAGGATAAAGGACCACCGAGGCTCAATGGGAACGTCCAAAAGACCAAAACCTCAAGCATGAATAGTTGTAGAGGAAAGCGAATAATAGACTATCCTATTATAATATTCATATTTAGACAGGAGTTTTTCAGTGGCAGTGCAAACGCAATTTGCCTGAAAGAAATTCTGAAGGATGTTAGGTCACGTGCGAAACGTGGCGGTGTCCGCCCAGCACTAGTCGGGTTAATACGCTCAACAGGTGAGAGCAACGAGACGCGTGAATCAGTGGGATTTCTGGAGGGCCTGCTTCGTTCGGTGTTTCGGAAACATCCACCAGAAGCCATCTGGGCAGGGCATTTCATTCCCAAGACAGAGGATAGGATGCTGGCCATCAAGAAATACGCCTGCAAAGCCATCTATTCGGCCCAATCCTCAGATAATTCTGAGGAAAGAGGGAACATGTTTTTAAGGCCATTCCAATGTTTGCCTTGGCCTAGAAGACACAACAGCCAGGCCAACAACACTTCAGCAAACAGGCAAAGAGgTGACGCTGCTAGTGCAGAGGAAGGGATCCCTCTGAAGACGGGTGTTTTGTCCTCTGGACCCCAGGCAGAGTCCGACTGTGGTGTAACCAAAAAGGACAGTCATGATGACACTCGTGGGTCATGATTTCCCATGTCCAACTGTGGACAATACTCAAACGTTGGTCTCAAGGAACATTGGTGTCTGTACAAGTCACATGTCTGGCACATTGGCCTTACAATCGGTCAGAGAAGAGTTGATACATTAGCCTGTGATTATGAACAATTTGAATTTAGCGATAACTCAAGTTACGCAACTTAATACATTTAGTGTACATGCGTATCTTGTGAGGTTACTCTGTTACATAACCATCCATGTATGATGTCACTTTAAATAATTGTCATGTAATATCTGCTTTTGTTGTTACAATGAGCTCATCTTGAATTGTAAAACAACAATGAAAAAATGTGTGACCAACAAACACTATGACCATTTACTTCATTCTGTTCGGTAAGTGTGATGGGATGCTGTTTTCAAACGAAACACAATACCTTGCTCTTGTTAAAGCTTTTAGAattgatttgtttatttgttattttctttTGCTTGACTTCAATTAACATTCAGCAACTAGTGAGTTTTAGTGTTTTTTAAAACAATATAGATTTAATAGGCGCAATGAGAAAGAGTTAGAAACAATTAGAAAGTCCAAAATGTGTGCCTTAGAAATTCAGTCGGCAcaaaaaaaatgttgggtaaaAAAACAACCCAGTCCTGGATATAAAAAACAACCCAGCCCTGGATAAAAAACAAAACCAACCCAGCcctgtgtaaaaaataaaaaacaacccAGCCCTGTgtaaaattttttttaaaaacagccCTGTGTATAAAAAACAACAACCCAGCCATGGATAGAAAACAACAACCCAGCCCTGTGTATAAAAAACAACAACCCAGCCCtgggtaaaaacaacaacaacccaGCCCTGgatataaaaaaacaacaacccagCCCTGGATATAAAAAACAACAACCCAGCCCTGGATATAAAAAACAACAACCCAGCCCTGGGTAAAAAAGCAACAACAACCCAGCCCtgggtaaaaaacaacaacaacccagccctgggtaaaaaaacaacaacaacccagccctgggtaaaaaaaacaacaacaacccagccctgggtaaaaaaaacaaaacaacaacccaGCCCTgggtataaaaaaaacaacaacccagCCCTGGGTATAAAAACAACAACCCAGCCCTggataaaa

Function

NR:

description
uncharacterized protein C2orf72 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614393.2 True 2360 mRNA 0.42 3 9218658 9221408

Neighbor

gene id symbol gene type direction distance location
LOC110531220 NA coding upstream 35576 9171968 ~ 9183082 (+)
usp13 LOC106574137 coding upstream 303258 8877591 ~ 8915400 (+)
ndufb5 LOC106574141 coding upstream 347374 8868110 ~ 8871284 (+)
LOC118966103 ankub1 coding upstream 367286 8799458 ~ 8851372 (+)
LOC118966266 ankub1 coding upstream 419691 8790231 ~ 8798967 (+)
psmd1 psmd1 coding downstream 18711 9240119 ~ 9300065 (+)
LOC118966743 LOC106574127 coding downstream 207109 9428517 ~ 9436879 (+)
LOC118966784 LOC106574127 coding downstream 229524 9450932 ~ 9460358 (+)
LOC118966781 LOC106574155 coding downstream 242638 9464046 ~ 9471323 (+)
LOC118936726 LOC106574155 coding downstream 255280 9476688 ~ 9477259 (+)
G7780 NA non-coding upstream 164 9217219 ~ 9218494 (+)
G7776 NA non-coding upstream 22931 9195355 ~ 9195727 (+)
G7757 NA non-coding upstream 64815 9153538 ~ 9153843 (+)
G7740 NA non-coding upstream 87813 9130604 ~ 9130845 (+)
G7581 NA non-coding upstream 341131 8874781 ~ 8877527 (+)
G8000 NA non-coding downstream 10118 9231526 ~ 9231756 (+)
G8009 NA non-coding downstream 16596 9238004 ~ 9238233 (+)
G8030 NA non-coding downstream 81684 9303092 ~ 9303588 (+)
G8031 NA non-coding downstream 82554 9303962 ~ 9304110 (+)
G8032 NA non-coding downstream 91007 9312415 ~ 9315424 (+)
LOC110505168 LOC106574179 other upstream 962780 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 988423 8229189 ~ 8231566 (+)
G6807 NA other upstream 1181504 8036617 ~ 8037154 (+)
G6518 NA other upstream 1332751 7885391 ~ 7885907 (+)
G6434 NA other upstream 1493049 7725046 ~ 7725609 (+)
LOC110510920 LOC106574155 other downstream 762367 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 919836 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 2255256 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 4017205 13238613 ~ 13295452 (+)

Expression


Co-expression Network