LOC118936718 (ankub1)


Basic Information

Item Value
gene id LOC118936718
gene name ankub1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9439687 ~ 9497588 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933547.1
CCGAAGCTACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatggGAAGGGATGTTAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGTACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCAGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGgggcTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCGCGGCCAGCTCACCATCCTCAAACTCTGTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCAGGATCCCCAGGGTCATGACCCCCTGAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCacgagggatgaaagagagaagaggggatgtgAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCACCCAGATCCTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGtgaaCAAGATGAGACTTTGGAACGGATGATGCCTGAAACAATGCGGACAACTTAGAATTTCGTTCCTTTGGATGAGGCTTATAGATATAGTCAGTACTGTGTTTGATTTGTGTGCAGAAAGTTTACAACGGCAGGCAGTGGATTCTCAGTCATTCCTCTCAAGGAACAAAAAACGTATCATATTTCACTGGCTATTTGTAGTAGCCAAATGTGAAtggaattattattattctacaatcatTCAGTTGACTGAATGTGACTGTGGTTGTGCTGTATGTGACTATGTGGTTGTACTGAATGTGACTATGTGGTTGTACTGaatgtggttgtactgtatgtgattgTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGTACGTAATTGTAAGTGTTTGACATGGGTCTAATTGAGGCTCCAACCCCCTGCCTTAAAACTCTTTTATTAAGATGTGGATCATTATTGCTCATATGAGTCTGTGCAGTGTCAAAAtaatacattcttatttacaatgatggccaaacccggacgacgctgggccaattatgcagcaccctatgggactcccaatcacttggGAGTGGGAAGGATACCAAATCCAATATCACACACTTCTTCCTTAGTATTCTGAGAACTGTCAGATAGCTGTGAGAGCTATGAGTGGATCGTGGACCCATGCATAAATGATAACTTTACTGTAACTCAGTGGGGCAAGTAGAACATCCGGGTTAGTGTATGTGCATTATCTGGAGAGTTGATTGTCTTTGTCTCAAAGCCTTTCCATTTCTGGGGTATTGAAGAAGCTTCTGATCTCAACCTTCTTGACAGGTAAGAAACACTTGGTTAGTGTATGTGTCTTATCCAATGGGTTGTCAGGTGAACGTTGAAGATGCTTCTTGGAGGTGATCTAATGATGTCATTGAGTTGCTCACTGGACAAGACAAT
>XM_036933493.1
ACCGAAGCTACACCCTGTGGCCacgagggatgaaagagagaagaagaggggatggGAAGGGATGTTAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGTACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCAGCCTGCAACTCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGgggcTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCGCGGCCAGCTCACCATCCTCAAACTCTGTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCAGGATCCCCAGGGTCATGACCCCCTGAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCGACGTTTGACCCCCATCAACTGCCCATCTCATGTATCCTGCCCGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCacgagggatgaaagagagaagaggggatgtgAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCACCCAGATCCTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGTGCCTTCACACAGAGACCATGGTTGCAGCAGCTGAATGTAGCGCGGACTCTGTCCAGGAGGAGTGCTCAGCACATTGGGTAGACACCAGGATCCTGGTCATTAGGCAGATTAAACATACTGAAACAAGGAGGGACAACTTGGAATTGTCCAAAAAGGAACTCTTAtttgagtttttattttttacagtgaaCAAGATGAGACTTTGGAACGGATGATGCCTGAAACAATGCGGACAACTTAGAATTTCGTTCCTTTGGATGAGGCTTATAGATATAGTCAGTACTGTGTTTGATTTGTGTGCAGAAAGTTTACAACGGCAGGCAGTGGATTCTCAGTCATTCCTCTCAAGGAACAAAAAACGTATCATATTTCACTGGCTATTTGTAGTAGCCAAATGTGAAtggaattattattattctacaatcatTCAGTTGACTGAATGTGACTGTGGTTGTGCTGTATGTGACTATGTGGTTGTACTGAATGTGACTATGTGGTTGTACTGaatgtggttgtactgtatgtgattgTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGAATGTGACTATGTGATTGTACTGAATGTGACTATGTGGTTGTGCTGTATGTGATTGTACTGTACGTAATTGTAAGTGTTTGACATGGGTCTAATTGAGGCTCCAACCCCCTGCCTTAAAACTCTTTTATTAAGATGTGGATCATTATTGCTCATATGAGTCTGTGCAGTGTCAAAAtaatacattcttatttacaatgatggccaaacccggacgacgctgggccaattatgcagcaccctatgggactcccaatcacttggGAGTGGGAAGGATACCAAATCCAATATCACACACTTCTTCCTTAGTATTCTGAGAACTGTCAGATAGCTGTGAGAGCTATGAGTGGATCGTGGACCCATGCATAAATGATAACTTTACTGTAACTCAGTGGGGCAAGTAGAACATCCGGGTTAGTGTATGTGCATTATCTGGAGAGTTGATTGTCTTTGTCTCAAAGCCTTTCCATTTCTGGGGTATTGAAGAAGCTTCTGATCTCAACCTTCTTGACAGGTAAGAAACACTTGGTTAGTGTATGTGTCTTATCCAATGGGTTGTCAGGTGAACGTTGAAGATGCTTCTTGGAGGTGATCTAATGATGTCATTGAGTTGCTCACTGGACAAGACAAT

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
protein ANKUB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933547.1 False 2934 mRNA 0.51 6 9439687 9497587
XM_036933493.1 True 3122 mRNA 0.51 6 9439687 9497588

Neighbor

gene id symbol gene type direction distance location
ppp1r2 LOC106574129 coding downstream 14015 9391663 ~ 9425672 (-)
LOC110530621 LOC106574130 coding downstream 55626 9309353 ~ 9384061 (-)
htr2b htr2b coding downstream 165830 9255578 ~ 9273857 (-)
LOC110531326 NA coding downstream 219498 9210496 ~ 9224400 (-)
pex5la LOC106574138 coding downstream 341118 8917868 ~ 9098569 (-)
LOC110515168 ankub1 coding upstream 18320 9515908 ~ 9557281 (-)
LOC118937727 ankub1 coding upstream 59757 9557345 ~ 9576558 (-)
LOC110515622 ankub1 coding upstream 78919 9576507 ~ 9629689 (-)
LOC110511241 ankub1 coding upstream 150945 9648533 ~ 9696603 (-)
LOC110530072 ankub1 coding upstream 191394 9688982 ~ 9788702 (-)
G8349 NA non-coding downstream 132444 9306992 ~ 9307243 (-)
G8347 NA non-coding downstream 133712 9305638 ~ 9305975 (-)
G8344 NA non-coding downstream 136979 9302469 ~ 9302708 (-)
G8011 NA non-coding downstream 201032 9238422 ~ 9238655 (-)
G7993 NA non-coding downstream 213802 9225514 ~ 9225885 (-)
G8443 NA non-coding upstream 37003 9534591 ~ 9609835 (-)
G8445 NA non-coding upstream 42158 9539746 ~ 9540053 (-)
G8457 NA non-coding upstream 78326 9575914 ~ 9650709 (-)
G8460 NA non-coding upstream 80991 9578579 ~ 9626379 (-)
G7965 NA other downstream 256653 9181455 ~ 9194911 (-)
G7985 NA other downstream 285740 9153270 ~ 9153947 (-)
LOC110529747 tsc22d2 other downstream 1064123 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 1255754 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 1400224 8039179 ~ 8039463 (-)
G8455 LOC106574127 other upstream 70353 9567941 ~ 9590586 (-)
G10263 NA other upstream 2065149 11562737 ~ 11563125 (-)
G10343 NA other upstream 2147492 11645080 ~ 11645703 (-)
G10776 NA other upstream 2358122 11855710 ~ 11856390 (-)
G10792 NA other upstream 2375517 11873105 ~ 11873891 (-)

Expression


Co-expression Network