LOC110510917 (LOC106574155)


Basic Information

Item Value
gene id LOC110510917
gene name LOC106574155
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9481039 ~ 9483610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036933405.1
ACGTGCAGAGAAGAATGTCTAGCCATACACCCACAGAGGACTCTGGACATCTTGTGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAACTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGCGAGAGTTCAAAACTTCTCTGGACTGAAACAGACGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAATGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTTTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAATGTCAGACACAacacttggttcaatcccaatATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTTGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCatgctcctccatctctctaacacCTACTTCAAAATTAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCATCCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTTTCATCCTGACAACCTCCGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACATGTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGCTTCTCCAGATATTTGCCGAAGAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTCTGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATCCAGCTCAATCCGAGCAAGCCAGAGGATAGTGACACAATGAATCAGCTCACGAAAGTCATGGTCAACCAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTCTTTTGAGTCCggtaccagcatggccaccagagACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGGGTTCCAAGAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTCCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCA
>TU9955
GAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTCCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCTTCTCCAACC

Function

NR:

description
uncharacterized protein LOC110506706

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036933405.1 False 2274 mRNA 0.45 3 9481039 9483610
TU9955 True 218 lncRNA 0.44 2 9483228 9483574

Neighbor

gene id symbol gene type direction distance location
LOC118936726 LOC106574155 coding upstream 3780 9476688 ~ 9477259 (+)
LOC118966781 LOC106574155 coding upstream 9716 9464046 ~ 9471323 (+)
LOC118966784 LOC106574127 coding upstream 20681 9450932 ~ 9460358 (+)
LOC118966743 LOC106574127 coding upstream 44160 9428517 ~ 9436879 (+)
psmd1 psmd1 coding upstream 180974 9240119 ~ 9300065 (+)
LOC118936730 LOC106574155 coding downstream 5340 9488950 ~ 9489521 (+)
LOC118936706 LOC106574155 coding downstream 9711 9493321 ~ 9496279 (+)
LOC118936734 LOC106574127 coding downstream 22278 9505888 ~ 9513475 (+)
LOC118936861 LOC106574155 coding downstream 43861 9527471 ~ 9534999 (+)
LOC118966312 LOC106574127 coding downstream 60727 9544337 ~ 9551047 (+)
G8075 NA non-coding upstream 113940 9366476 ~ 9367099 (+)
G8032 NA non-coding upstream 165615 9312415 ~ 9315424 (+)
G8031 NA non-coding upstream 176929 9303962 ~ 9304110 (+)
G8030 NA non-coding upstream 177451 9303092 ~ 9303588 (+)
G8009 NA non-coding upstream 242806 9238004 ~ 9238233 (+)
G8142 NA non-coding downstream 33245 9516855 ~ 9557160 (+)
G8143 NA non-coding downstream 37177 9520787 ~ 9561179 (+)
G8144 NA non-coding downstream 42886 9526496 ~ 9677481 (+)
G8157 NA non-coding downstream 90035 9573645 ~ 9574529 (+)
G8158 NA non-coding downstream 92226 9575836 ~ 9788175 (+)
LOC110505168 LOC106574179 other upstream 1225161 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1250804 8229189 ~ 8231566 (+)
G6807 NA other upstream 1443885 8036617 ~ 8037154 (+)
G6518 NA other upstream 1595132 7885391 ~ 7885907 (+)
LOC110510920 LOC106574155 other downstream 500165 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 657634 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 1993054 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3755003 13238613 ~ 13295452 (+)
G12410 NA other downstream 4145253 13617059 ~ 13666871 (+)

Expression


Co-expression Network