LOC110515168 (ankub1)


Basic Information

Item Value
gene id LOC110515168
gene name ankub1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9515908 ~ 9557281 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937672.1
CTGGACTGTTTTGTTCCGGAACCTACTTGGCCGAATCCGGTACCTCTCGTGCCATGAAAAATAATTTTCACTTTTTGCTATGTAACAATTATAATAAAAGCGATCAAAGTTCATTCGAGTTGCCTCTTCGTCAATTATCCTGCCCCCTCATCTCTCCAGAGTTGCACTTCATCATTtgtttccttatagaatcatagctgCATGAAGGGTTCTGGAGGAATTTTCTAAAGTTACggaattactgctgtctgttcagaaataaattaAATCATTCAGAATAGCCTAATACGTCATGAGAAGCCCTATAATTTAGCTACAGAGGACCAATGGCCCCTTTTTTAAATAGCCTAGCTGCggattgtagcccaataacaaagaatagcctacagtcgggaacgcgaggcaaatctgtcagtgaaaaaacagcaggcagacaaaacaggccttttgcaatatttcaaatacaatcgagGGAAAACACAGATTGAAAAGCAATGACTCTTGCTGAAAAGATAAGACTATGCTGTAgactaccaaaatatttgatcaaaacccaaacattgttttacaaaacagagagagggagagatagcctTTTGACACGAGCGCATCGACAATCTCCAGCGagtgagctgcgcatcattggGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCAGCCTGCAACTCTACGACTGCAACTGGCTGCACGACTACGCCATTGACCTGGGTATGGCCTTCCTTGTGCAGTAGATCAATGGTCCTCTGGCTCAACACCTTATGGATGTAACATAGAGACAAATGGACTGTATGGAACACATTCTTGGTTCATGGAAACCAGGAGGACAACCtgcatgtgtctctgtctcccagggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTCCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGAGGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCTCGGCCAGCTCACCATCCTCAAACTCTGTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCAGGATCCCCAGGGTCGTGACCCCCTGAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCTTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCAAAGTTTGACCCCCATCAACTGCCCATCTCATGTAACCTGCCAGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCACGAGtgatgaaagagagaagaagaggggatgtGGAGGGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGtgaaCAAGATGAGACTTTGGAACGGATGATGCCTGAAACAATGCGGACAACTTAGAATTTCGTTCCTTTGGATGAGGCTTATAGATATAGTCAGTACTGTGTTTGATTTGTGTGCAGAAAGTTTACAACGGCAGGCAGTGGATTCTCAGTCATTCCTCTCAAGGAACAAAAAACGTATCATATTTCACTGGCTATTTGTAGTAGCCAAATGTGAAtggaattattattattctagAATCATTCAGTTGACTGAATGTGACTGTGGTTGTGCTGTATGTGACTATGTGGTTGTACTGAA
>XM_036937548.1
CTGGACTGTTTTGTTCCGGAACCTACTTGGCCGAATCCGGTACCTCTCGTGCCATGAAAAATAATTTTCACTTTTTGCTATGTAACAATTATAATAAAAGCGATCAAAGTTCATTCGAGTTGCCTCTTCGTCAATTATCCTGCCCCCTCATCTCTCCAGAGTTGCACTTCATCATTtgtttccttatagaatcatagctgCATGAAGGGTTCTGGAGGAATTTTCTAAAGTTACggaattactgctgtctgttcagaaataaattaAATCATTCAGAATAGCCTAATACGTCATGAGAAGCCCTATAATTTAGCTACAGAGGACCAATGGCCCCTTTTTTAAATAGCCTAGCTGCggattgtagcccaataacaaagaatagcctacagtcgggaacgcgaggcaaatctgtcagtgaaaaaacagcaggcagacaaaacaggccttttgcaatatttcaaatacaatcgagGGAAAACACAGATTGAAAAGCAATGACTCTTGCTGAAAAGATAAGACTATGCTGTAgactaccaaaatatttgatcaaaacccaaacattgttttacaaaacagagagagggagagatagcctTTTGACACGAGCGCATCGACAATCTCCAGCGagtgagctgcgcatcattggGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCAGCCTGCAACTCTACGACTGCAACTGGCTGCACGACTACGCCATTGACCTGGGTATGGCCTTCCTTGTGCAGTAGATCAATGGTCCTCTGGCTCAACACCTTATGGATGTAACATAGAGACAAATGGACTGTATGGAACACATTCTTGGTTCATGGAAACCAGGAGGACAACCtgcatgtgtctctgtctcccagggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTCCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGAGGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCTCGGCCAGCTCACCATCCTCAAACTCTGTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCAGGATCCCCAGGGTCGTGACCCCCTGAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCTTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCAAAGTTTGACCCCCATCAACTGCCCATCTCATGTAACCTGCCAGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCACGAGtgatgaaagagagaagaagaggggatgtGGAGGGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGTGCCTTCACACAGAGACCATGGTTGCAGCAGCTGAATGTAGCGCGGACTCTGTCCAGGAGGAGTGCTCAGCACATTGGGTAGACACCAGGATCCTGGTCATTAGGCAGATTAAACATACTGAAACAAGGAGGGACAACCTGAAATTGTCCAAAAAGGAACTCTTAtttgagtttttatttt
>XM_036937637.1
CTGGACTGTTTTGTTCCGGAACCTACTTGGCCGAATCCGGTACCTCTCGTGCCATGAAAAATAATTTTCACTTTTTGCTATGTAACAATTATAATAAAAGCGATCAAAGTTCATTCGAGTTGCCTCTTCGTCAATTATCCTGCCCCCTCATCTCTCCAGAGTTGCACTTCATCATTtgtttccttatagaatcatagctgCATGAAGGGTTCTGGAGGAATTTTCTAAAGTTACggaattactgctgtctgttcagaaataaattaAATCATTCAGAATAGCCTAATACGTCATGAGAAGCCCTATAATTTAGCTACAGAGGACCAATGGCCCCTTTTTTAAATAGCCTAGCTGCggattgtagcccaataacaaagaatagcctacagtcgggaacgcgaggcaaatctgtcagtgaaaaaacagcaggcagacaaaacaggccttttgcaatatttcaaatacaatcgagGGAAAACACAGATTGAAAAGCAATGACTCTTGCTGAAAAGATAAGACTATGCTGTAgactaccaaaatatttgatcaaaacccaaacattgttttacaaaacagagagagggagagatagcctTTTGACACGAGCGCATCGACAATCTCCAGCGagtgagctgcgcatcattggGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGGTACCAGCCGAACACCTAGCTGTTTCTACCCGTGCTTGAAAATGCATATCAAACGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCAGCCTGCAACTCTACGACTGCAACTGGCTGCACGACTACGCCATTGACCTGGGTATGGCCTTCCTTGTGCAGTAGATCAATGGTCCTCTGGCTCAACACCTTATGGATGTAACATAGAGACAAATGGACTGTATGGAACACATTCTTGGTTCATGGAAACCAGGAGGACAACCtgcatgtgtctctgtctcccagggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTCCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGAGGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCTCGGCCAGCTCACCATCCTCAAACTCTGTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCAGGATCCCCAGGGTCGTGACCCCCTGAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCTTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCAAAGTTTGACCCCCATCAACTGCCCATCTCATGTAACCTGCCAGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCACGAGtgatgaaagagagaagaagaggggatgtGGAGGGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGTGCCTTCACACAGAGACCATGGTTGCAGCAGCTGAATGTAGCGCGGACTCTGTCCAGGAGGAGTGCTCAGCACATTGGGTAGACACCAGGATCCTGGTCATTAGGCAGATTAAACATACTGAAACAAGGAGGGACAACCTGAAATTGTCCAAAAAGGAACTCTTAtttgagtttttatttt
>XM_036937605.1
TGTTTGCCTCACCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGATTACTTCCACGTGCAACTGTCAGACGACAAGCAGGTGAGGCACTTCCTGGAGCTGAGCTATGCTGGTGCCATCCTTCGGGACAGCTGGGTCCTGACAGACGTTGGCATCACCCCTAGCAGTGCCATCTGCTGCCTGCTGAAGCGGGAGCCGGTGGTGCGTGTGTTCAGTGCCGTGACGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCAGCCTGCAACTCTACGACTGCAACTGGCTGCACGACTACGCCATTGACCTGGGTATGGCCTTCCTTGTGCAGTAGATCAATGGTCCTCTGGCTCAACACCTTATGGATGTAACATAGAGACAAATGGACTGTATGGAACACATTCTTGGTTCATGGAAACCAGGAGGACAACCtgcatgtgtctctgtctcccagggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTCCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGAGGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCTCGGCCAGCTCACCATCCTCAAACTCTGTATCGCCAGCAGCGTTCTGACCCTTGCCTGTCAGGATCCCCAGGGTCGTGACCCCCTGAGGATCGCCCTTCAGTACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCTTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCAAAGTTTGACCCCCATCAACTGCCCATCTCATGTAACCTGCCAGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCACGAGtgatgaaagagagaagaagaggggatgtGGAGGGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGTGCCTTCACACAGAGACCATGGTTGCAGCAGCTGAATGTAGCGCGGACTCTGTCCAGGAGGAGTGCTCAGCACATTGGGTAGACACCAGGATCCTGGTCATTAGGCAGATTAAACATACTGAAACAAGGAGGGACAACCTGAAATTGTCCAAAAAGGAACTCTTAtttgagtttttatttt

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
protein ANKUB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937672.1 False 2481 mRNA 0.52 5 9515908 9526422
XM_036937548.1 False 2364 mRNA 0.53 5 9516212 9526422
XM_036937637.1 False 2417 mRNA 0.53 5 9516212 9526422
XM_036937605.1 True 1830 mRNA 0.58 5 9516212 9557281

Neighbor

gene id symbol gene type direction distance location
LOC118966297 ankub1 coding downstream 10563 9497513 ~ 9505345 (-)
LOC118936718 ankub1 coding downstream 18320 9439687 ~ 9497588 (-)
ppp1r2 LOC106574129 coding downstream 90236 9391663 ~ 9425672 (-)
LOC110530621 LOC106574130 coding downstream 131847 9309353 ~ 9384061 (-)
htr2b htr2b coding downstream 242051 9255578 ~ 9273857 (-)
LOC118937727 ankub1 coding upstream 64 9557345 ~ 9576558 (-)
LOC110515622 ankub1 coding upstream 19226 9576507 ~ 9629689 (-)
LOC110511241 ankub1 coding upstream 91252 9648533 ~ 9696603 (-)
LOC110530072 ankub1 coding upstream 131701 9688982 ~ 9788702 (-)
LOC110518492 ankub1 coding upstream 231883 9789164 ~ 9811777 (-)
G8349 NA non-coding downstream 208665 9306992 ~ 9307243 (-)
G8347 NA non-coding downstream 209933 9305638 ~ 9305975 (-)
G8344 NA non-coding downstream 213200 9302469 ~ 9302708 (-)
G8011 NA non-coding downstream 277253 9238422 ~ 9238655 (-)
G7993 NA non-coding downstream 290023 9225514 ~ 9225885 (-)
G8457 NA non-coding upstream 18633 9575914 ~ 9650709 (-)
G8460 NA non-coding upstream 21298 9578579 ~ 9626379 (-)
G8479 LOC106574155 non-coding upstream 143983 9701264 ~ 9724238 (-)
LOC110514871 ankub1 non-coding upstream 300546 9833280 ~ 9894696 (-)
G7965 NA other downstream 332874 9181455 ~ 9194911 (-)
G7985 NA other downstream 361961 9153270 ~ 9153947 (-)
LOC110529747 tsc22d2 other downstream 1140344 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 1331975 8164276 ~ 8183933 (-)
G6810 LOC107579696 other downstream 1476445 8039179 ~ 8039463 (-)
G8455 LOC106574127 other upstream 10660 9567941 ~ 9590586 (-)
G10263 NA other upstream 2005456 11562737 ~ 11563125 (-)
G10343 NA other upstream 2087799 11645080 ~ 11645703 (-)
G10776 NA other upstream 2298429 11855710 ~ 11856390 (-)
G10792 NA other upstream 2315824 11873105 ~ 11873891 (-)

Expression


Co-expression Network