LOC118937403 (LOC106574155)


Basic Information

Item Value
gene id LOC118937403
gene name LOC106574155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9731004 ~ 9737800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936416.1
AGGATTCGTAATGGCATTTCTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTATGGatcaggaagaggaagaagagcagGAATCACAACAACTTAAGTTCAAGGAGATGTACCTGACTAAGGAGATGGGCAGTCTGGGCAGTGGAAGCTACTGCCCAAAACCATTGCCCAAGCCAGCCATGAGaaccTCTCTGTCTGATGTGCAGAAGAAGACAACCAACTCTGACTCGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTCCGAAGATGACCCCTGCTGTAATGGCAGAAGTGATTAAAGATGTCAAGTCGGCCGTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTCAAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACGAACAGAATTTGCTGAAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGACGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAACATTGGTGAATCTGGTTCTTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGCCAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCGTTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTAATTTGGGCACAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATTTCAGAGCTTCTGGGATTGTACAACACTGAGATGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTCTCTATTGAGAGACAACAATTTGTAGAGGGTGTTCTGGCTCAGCATGGGGAATACTCCCATTCCAGGGCCTCATCACCAATAGTATCTGAGGTCCCCTCTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGCATGAAAAAACTCTCAAGTGAGGAAttcaagagagacaccactcaaGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCAACAGTAGCTTACCGAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCGTTCAAAACCAGAGAACCTTGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTCGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGGCTTCACCATTCACCGGCGGAGATCAGACGTGCAGAGAAGAATGTCTAGCCATACACCCACAGAGGACTCTGGACATCTTGTGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAGCTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGAGAGTTCAAAACTTCTCTGGACTGAAACAGAAGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGTGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTTTCTAGTCATGCGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATATACATCCACCacatctactgatattatacaaaccATAGTGAAAGATCTGCAGGAGATCACCCAGAAAACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAATAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATATTTACATATCAAAGCAGTCCTGCTTCACAAAGAGCAAGTCTCTGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTAAGCTCTCAGGATCCATGCTGGAGGATATTGGCACGATCCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTCTTCTTCacgctcctccacctctctaacaCCTACTTCAAAATCAAAGCAGTCAGAATGGGACTTCACCTTGCCCGGTACTCCCATCCCCACTGAATTATCTGCTCAGAGTGACTTTCCCATTGTAAGAAACATGATCATTCAGGACTTGTTTCACACAGAGAACTTACTTCCCCCAACCTTTGTGGACAAAGTCAGACAAGCTGCTGGGGTGGTAGTGGACGAAATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCTCATCCTGACAACCTCAGATCTGCTGttaggaaattgagaaaaataatTTCCACTGGGACCATCCACATTTTCAGTCATGAATTTGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAGGAAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAATAGACAGTGAAGGGCTTCCTAAAACAGTGGTTAGATGAGTATGAAAATATCAACATTGATGTTTCAGTCCAGAATGAACCAAGCACCTCTACTTGCATGGTCTTTCCTATCCAGCTCAATCAGAGCAAGCCAGAGGATACTGACACAATGAATCAGCTCACGAAGGTCATGGTCAACAAAATGATGGATGCCTTATCAGTTGGCTCAAGTCATCAAATGATCACCAAAGCCAATGCCAAATGTTATTTTGAGTCCagtaccagcatggccaccagagACATTGTAGAAGGGATGTTGGATTTGGTAAGGGATAGCACCAGCAGTACTGGAGAGCAGATCCCCATCTTCAAGTCCAAGAAAAGCAAGAAAACCATGTTCAGCAAGATATGCTTTAACATAAAGTGTTCCAAGAAAGTTAGAAAGGACCACTGTCCTCAAAAGTCTATGgagtaccagcctcagaacacTTCCCCTACTGTGTACTTTACAGAGTCGAGGACAAATTCTCATGGCTCCTTTGCTCCAGAGGGAAATGACATCGCATATTTCTTCCCACCTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGAATGTATAGAGCCATCACTAGAAGCCTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCATTTGTTGTCATATgttgactgttttgctagcacagactgtaaTATGTTCTGCGATTCATCCAcatgcattgaggagtataccacctcagtcacaggCTACATCAATAAGTGGATCGACAACGTCGtgcccacagtgaccgtatgtacatatccccgacagaagccatggattacaggcaacatccacaccgcgctaaaggctagagctgcttctttcaaggagcgggacactaatccagacacttatatgaaatcctgctatgcc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106574155

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936416.1 True 4755 mRNA 0.46 5 9731004 9737800

Neighbor

gene id symbol gene type direction distance location
LOC118937357 LOC106574127 coding upstream 4481 9676218 ~ 9726523 (+)
LOC118937070 LOC106574127 coding upstream 25062 9677794 ~ 9705942 (+)
LOC118937339 LOC106574127 coding upstream 62531 9637743 ~ 9668473 (+)
LOC118937687 LOC106574127 coding upstream 66878 9658438 ~ 9664126 (+)
LOC118937363 LOC106574127 coding upstream 107314 9613655 ~ 9623904 (+)
LOC110510916 LOC106574155 coding downstream 4105 9741905 ~ 9756269 (+)
LOC118937415 LOC106574155 coding downstream 20138 9757938 ~ 9780167 (+)
LOC118966328 LOC106574127 coding downstream 61873 9799673 ~ 9802451 (+)
LOC118936500 LOC106574127 coding downstream 64656 9802456 ~ 9806644 (+)
LOC110515163 LOC106574155 coding downstream 81417 9819217 ~ 9826268 (+)
G8176 NA non-coding upstream 40900 9688910 ~ 9690104 (+)
G8144 NA non-coding upstream 53523 9526496 ~ 9677481 (+)
LOC118937346 LOC106574127 non-coding upstream 83191 9586463 ~ 9647813 (+)
G8200 NA non-coding downstream 34264 9772064 ~ 9933555 (+)
G8225 NA non-coding downstream 121604 9859404 ~ 9915393 (+)
G8231 NA non-coding downstream 154617 9892417 ~ 9931446 (+)
LOC118937372 LOC106574127 non-coding downstream 170006 9900861 ~ 9925501 (+)
G8238 NA non-coding downstream 190039 9927839 ~ 9947260 (+)
LOC118966784 LOC106574127 other upstream 271051 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1475126 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1500769 8229189 ~ 8231566 (+)
G6807 NA other upstream 1693850 8036617 ~ 8037154 (+)
G6518 NA other upstream 1845097 7885391 ~ 7885907 (+)
LOC110510920 LOC106574155 other downstream 245975 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 403444 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 1738864 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3500813 13238613 ~ 13295452 (+)
G12410 NA other downstream 3891063 13617059 ~ 13666871 (+)

Expression


Co-expression Network