LOC118937415 (LOC106574155)


Basic Information

Item Value
gene id LOC118937415
gene name LOC106574155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9757938 ~ 9780167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936590.1
ttggaaaggcacatacctaaggtcccacagttgacagtgcaaaaatctattttaattccaggttataaggcaacaaaatagggaaaatgccaaggggggtgaatactttcgcaagccactgtaaatggTTCAGTTCACATAAACAGTCATTATTTTCAGTTTGAGAGATCATCCCGGGCTTTGCCCCGTCTGCTGTAGCTGAGATGTCCCTGGAGGACATAGAACAACAAGACTATGATGTTTCTGACACTGAGAGAGTCAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtggtggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGGAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGTATGTTTGACCCGCTGACAAAACATCAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagagcagGAATCACAACTTAAGTTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGGTATGTTCTTAAAGGGAAATTtaacaacttcatattcatctccAGCATCACCATATGTGAAAATTACACATTTCCATGctttgtagtaaaaaaaatatagaggGACGTAACTGTTTCCAATAGTGCTGAgaaattagtgctttttgaggttggtttggtttccattcaaatatttaaaaaataatcacggttttGGATTTCAATACTTTTTTTAGACATTGAATGCATTATGGATTATgtgtgttgaatgctgtaacaacacataataaaacaatgaataaaagtcccatgatggtagtgactgtccattactgttTATGACTTATCAACCATCATTTACTTTCtcatataaaatatttatttgatgactttattatttcattccaagtcatcaactcttctctatagagctgctgcttatcctgtctgacaaaatcactattttagtagttcttctaaGTAAATAAGACCTACTTTTATGACCGCTGAACACCAActgtcaatcacttagatcatgtatttccaGGTAGAGAATCCTCGCAACGCAACTGCTTTTTATCTCTCTCATGCATTCTCTCGTCTCTCCGTCTCAGTTAATGAGGTTTCCGTATCTGCTCCACACAGAGTGGACAAGCAAGTGggcgtgcaatggattatggGAATTAATTGCCGTATTTTctgtgctaaactatgtagaatattggcctgttggaaactacaactccctactacattgcatagttcgtgcttgatctgatttatctctacagaaactgAGCATCGAgctcacag
>XM_036936625.1
ttggaaaggcacatacctaaggtcccacagttgacagtgcaaaaatctattttaattccaggttataaggcaacaaaatagggaaaatgccaaggggggtgaatactttcgcaagccactgtaaatggTTCAGTTCACATAAACAGTCATTATTTTCAGTTTGAGAGATCATCCCGGGCTTTGCCCCGTCTGCTGTAGCTGAGATGTCCCTGGAGGACATAGAACAACAAGACTATGATGTTTCTGACACTGAGAGAGTCAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtggtggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGGAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAGGGGGATTCGTGAGGGTATGTTTGACCCGCTGACAAAACATCAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGgactctaacctctctgtctgatgTGCAGAAGAAAACAACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTACAGGACAGCCTGCAAGG
>XM_036936517.1
AGCTGAGATGTCCCTGGAGGACATAGAACAACAAGACTATGATGTTTCTGACACTGAGAGAGTCAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtggtggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGAAGCAAACCAGCACTGTggaaaccacagaagaagagagCCTCAACAGTGCGAGTTTTTTTCACTGATTATCAACTTCCTGCAGAACCTAACTGAGGAGCAATGGAGTAGGATTCGTAATGGCATTTCTGACCCGCTGACAAAACAACAGCTTGCCGGCTTGTGTCTGAGGATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCCTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTATGGatcaggaagaggaagaagagcagGAATCACAACAACTTAAGTTCAAGGAGATGTACCTGACTAAGGAGATGGGCAGTCTGGGCAGTGGAAGCTACTGCCCAAAACCATTGCCCAAGCCAGCCATGAGaacCTCTCTGTCTGATGTGCAGAAGAAGACAACCAACTCTGACTCGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTCGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTCTCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTCCGAAGATGACCCCTGCTGTAATGGCAGAAGTGATTAAAGATGTCAAGTCGGCCGTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTCAAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAGAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACGAACAGAATTTGCTGAAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGACGATCTTGATGCCCTGATAAGGAAATACGAGAGCAGCTACAACATTGGTGAATCTGGTTCTTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGCCAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCGTTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGCGATGTGCCTTAAAgagcattgtcacatctgatgATAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGAAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTAATTTGGGCACAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATTTCAGAGCTTCTGGGATTGTACAACACTGAGATGTCAAAGGAGGACGCCCTGTACACTGTTGGAGAAAAAGGATCAGGCTTCTCTATTGAGAGACAACAATTTGTAGAGGGTGTTCTGGCTCAGCATGGGGAATACTCCCATTCCAGGGCCTCATCACCAATAGTATCTGAGGTCCCCTCTCAAATTGAGGACAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGCATGAAAAAACTCTCAAGTGAGGAAttcaagagagacaccactcaaGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCAACAGTAGCTTACCGAGTGCACAGCCTGCTTATTCTGTAGCATCCAGGTCTTGTTCCGTTCAAAACCAGAGAACCTTGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTCGGCGCAACCTGcagaagtagaggagagagaacctgaccTCCAGGAAAATGCACAAAAGCTACAGAGCAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGGCTTCACCATTCACCGGCGGAGATCAGACGTGCAGAGAAGAATGTCTAGCCATACACCCACAGAGGACTCTGGACATCTTGTGACTAAGGAGTACCTTGGTTTGGCAAGCCAGAGCTTGACGCAAGCTAGTAAGAGTGTGCCTCACTTGCCCAGTTTGAACCAGGAAGTGACTCTACACATGGGTGTCAGAGAGTTCAAAACTTCTCTGGACTGAAACAGAAGAGGGTCTAATGAACAATAGTACCAAACAGGTCATTTCAACAATCTTGACCTCATGTGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATATTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTACTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACGTTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCATCTCTAGATCATTTAACATTGTGGAGGAAGGCACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgata

Function

NR:

description
PREDICTED: uncharacterized protein LOC106574155

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936590.1 False 1687 mRNA 0.42 5 9757938 9779379
XM_036936625.1 False 693 mRNA 0.47 6 9757938 9780167
XM_036936517.1 True 3122 mRNA 0.47 6 9758134 9767690

Neighbor

gene id symbol gene type direction distance location
LOC110510916 LOC106574155 coding upstream 1669 9741905 ~ 9756269 (+)
LOC118937403 LOC106574155 coding upstream 20138 9731004 ~ 9737800 (+)
LOC118937357 LOC106574127 coding upstream 31415 9676218 ~ 9726523 (+)
LOC118937070 LOC106574127 coding upstream 51996 9677794 ~ 9705942 (+)
LOC118937339 LOC106574127 coding upstream 89465 9637743 ~ 9668473 (+)
LOC118966328 LOC106574127 coding downstream 19506 9799673 ~ 9802451 (+)
LOC118936500 LOC106574127 coding downstream 22289 9802456 ~ 9806644 (+)
LOC110515163 LOC106574155 coding downstream 39050 9819217 ~ 9826268 (+)
LOC110511657 LOC106574155 coding downstream 45842 9826009 ~ 9828460 (+)
LOC110515172 LOC106574127 coding downstream 57361 9837528 ~ 9845115 (+)
G8176 NA non-coding upstream 67834 9688910 ~ 9690104 (+)
G8144 NA non-coding upstream 80457 9526496 ~ 9677481 (+)
LOC118937346 LOC106574127 non-coding upstream 110125 9586463 ~ 9647813 (+)
LOC118937363 LOC106574127 non-coding upstream 134034 9613655 ~ 9623904 (+)
G8225 NA non-coding downstream 79237 9859404 ~ 9915393 (+)
G8231 NA non-coding downstream 112250 9892417 ~ 9931446 (+)
LOC118937372 LOC106574127 non-coding downstream 127639 9900861 ~ 9925501 (+)
G8238 NA non-coding downstream 147672 9927839 ~ 9947260 (+)
G8263 NA non-coding downstream 227843 10008010 ~ 10008505 (+)
LOC118966784 LOC106574127 other upstream 297985 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1502060 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1527703 8229189 ~ 8231566 (+)
G6807 NA other upstream 1720784 8036617 ~ 8037154 (+)
G6518 NA other upstream 1872031 7885391 ~ 7885907 (+)
LOC110510920 LOC106574155 other downstream 203608 9980527 ~ 9991542 (+)
gipc3 LOC106574151 other downstream 361077 10140230 ~ 10162948 (+)
LOC110523899 LOC106574090 other downstream 1696497 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3458446 13238613 ~ 13295452 (+)
G12410 NA other downstream 3848696 13617059 ~ 13666871 (+)

Expression


Co-expression Network