LOC110519733 (ankub1)


Basic Information

Item Value
gene id LOC110519733
gene name ankub1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9827287 ~ 9830366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021596686.2
atgtgtctctgtctcccagggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGATGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTGAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCGCGGCCAGCTCACCATCCTCAAACTCTTTATTGCCAGCAGCGTTCTGACCCTTGCCTGTCGGGATCCCCAGGGTCGCGACCCCCTGAGGATCGCCCTTCAATACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAGGCTGTGCTCTGTGGTGGTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCCTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCAAAGTTTGACCCCCATCAACTGCCCATCTCATGTAACCTGCCCGCTCCGTGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCACGAGTGatgaaagagagaacaagaggggaTGTGGAGGGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGACTCGCCAAACTCCGCCCAGATCCTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGTGCCTTCACACAGAGACCATGGTTGCAGCAGCTGAATGTAGCGCGGACTCTGTCCAGGAGGAGTGCTCAGCACATTGGGTAGACACCAGGATCCTGGTCATTAGGCAGATTAAACATACTGAAACAAGGAGGGACAACCTGGAATTGTCCAAAAAGGAACTCTTAtttgagtttttatttttattttttacagtgaaCAAGATGAGACTTTGGAACGGATGATGCCTGAAACAATGCGGACGACTTAGAATTTCGTTCCTTTGGATGAGGCTTATAGATATagtctttgcctgtttgatggttagtctgagggcatagcaggatttcatataagtgtctggattagtgtcccgctccttgaaagaagcagctctagcctttagcgtggtgtggatgttgcctgtaatccatggcttctgtcggtgatatgtacatacggtcactgtgggcaCGACGTTGTCGATCCGCTTATTGATGTAGtctgtgactgaggtggtatactcctcaatg

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
protein ANKUB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021596686.2 True 1568 mRNA 0.56 3 9827287 9830366

Neighbor

gene id symbol gene type direction distance location
LOC110518492 ankub1 coding downstream 15510 9789164 ~ 9811777 (-)
LOC110530072 ankub1 coding downstream 38585 9688982 ~ 9788702 (-)
LOC110511241 ankub1 coding downstream 130684 9648533 ~ 9696603 (-)
LOC110515622 ankub1 coding downstream 197598 9576507 ~ 9629689 (-)
LOC118937727 ankub1 coding downstream 250729 9557345 ~ 9576558 (-)
LOC110514871 ankub1 coding upstream 2914 9833280 ~ 9894696 (-)
LOC118966367 ankub1 coding upstream 66345 9896711 ~ 9912583 (-)
LOC118937721 ankub1 coding upstream 95625 9925991 ~ 9930497 (-)
LOC118966397 NA coding upstream 115986 9946352 ~ 9948738 (-)
LOC110514908 ankub1 coding upstream 118544 9948910 ~ 9977803 (-)
G8479 LOC106574155 non-coding downstream 103049 9701264 ~ 9724238 (-)
G8457 NA non-coding downstream 176578 9575914 ~ 9650709 (-)
G8460 NA non-coding downstream 200908 9578579 ~ 9626379 (-)
G8443 NA non-coding downstream 217452 9534591 ~ 9609835 (-)
G8532 NA non-coding upstream 79520 9909886 ~ 9931006 (-)
G8547 NA non-coding upstream 151852 9982218 ~ 9982559 (-)
G8574 NA non-coding upstream 212820 10043186 ~ 10043434 (-)
G8399 NA non-coding upstream 220704 10051070 ~ 10053224 (-)
G8455 LOC106574127 other downstream 236701 9567941 ~ 9590586 (-)
G7965 NA other downstream 644253 9181455 ~ 9194911 (-)
G7985 NA other downstream 673340 9153270 ~ 9153947 (-)
LOC110529747 tsc22d2 other downstream 1451723 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 1643354 8164276 ~ 8183933 (-)
G10263 NA other upstream 1732371 11562737 ~ 11563125 (-)
G10343 NA other upstream 1814714 11645080 ~ 11645703 (-)
G10776 NA other upstream 2025344 11855710 ~ 11856390 (-)
G10792 NA other upstream 2042739 11873105 ~ 11873891 (-)
LOC118938491 NA other upstream 2356538 12186901 ~ 12205391 (-)

Expression


Co-expression Network