LOC118966367 (ankub1)


Basic Information

Item Value
gene id LOC118966367
gene name ankub1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9896711 ~ 9912583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989301.1
tggatttaacaagtgacatcattaagggatcatagctttcacctagattcacctggtcagtctttgtcatggaaagaacaggtgttcataatgttttgtttactcggtgtataaacacaacataggTATTTATGTAAAACAAGTGAATTTACTGTATGTCCATGGTCTTATACTTCAGCGGGAGCCGGTGGTGCATGTGTTCAGTGCCGTGAAGGGGGAGACCCTCTCAGTCTTGGGCACTGTGTTTCTCCTGAGTACGTCTGTGGCCAGGCTCATGACCCTGGTGTCCCAGCAGTGTGGGCTTCCCGTCAGCTCCTTCAGACTGAGCTCTCCCACCGGCCTGCAAATCTACGACTGCAACCGGCTGCACGACTACGCCATTGACCTGGggGCTACTCTACGGTTGGACACCTGGGATGGGTGGGCGGAGTTCCTCAGAGGCTGCTTCCTGGGACACAGACTGACCGTCCAACGACACCTGTCTAGGGAGAGACCTGTGAGGAGGTTCCAGCTCCGGGTGGCACTCTACATCGCTGCTTCTCTGGGCCACCTGGACCTGGCCGGCTGGCTGCTGGAGAGGGGGGTGCGTGTCATTGAGCCGGTGGGGGTTCACCCTTACCGTCAGTGGTGCCACCAGACGGCCCACCCCGACGTCGCCAAGTGTCCCGCTGTCGCCTCCATCGAGCGCGGCCAGCTCACCATCCTCAAACTCTTTATTGCCAGCAGCGTTCTGACCCTTGCCTGTCGGGATCCCCAGGGTCGCGACCCCCTGAGGATCGCCCTTCAATACGGCCACAGGGAGTGTGTGAGTCACCTGGCCACCAAGCTGTGCTCTGTGGTATTCCTCCCAGGTATGGCCCTGCCCATGCGGACATACCTCCAGATAAAGGGCTGGGTGAGGCTGGGGCAGAGGAGGGCAGCATCCAGGCACTGCATGGGCCTCAACAGGGCTCCGTTCAGGACCAGGGTGGGCGACACGGTCCTGGTGGACGGCTTCACCCTCCCCAAGATGTCTTCCAAGCCCAGGAGGAGTGAGGCCAAGGCGGGTATCAGGGTGATGTCCACAGCCTCTCAAAGTTTGACCCCCATCAACTGCCCATCTCATGTAACCTGCCCGCTCCGCGCCCTGGCATCCCAGGATAAACCTCTTCAACTACCGAAGCAACACCCTGTGGCCACGAGtgatgaaagagagaagaagaggggatgtGGAGGGAAGGGATGTGAGGAGGATGAGAGTGGGGATCAGAACAGCAACCAATGGAGGAGCAGAGTCCCGCTCCCGCCCATTTCCAGAGACACCAATCTCAGACCTGTGTTTGCCTCGCCAAACTCCGCCCAGATACTCACCACCTCACTGGAGGCCTTTTCTCTCCACTGCGACCGCACACCCAGAGAAAACGCCATATACTGTTTGGCCTTGGCCAGGATTACTTCCACGTGCAACTGTCAGATGACAAGCAGGTGA

Function

symbol description
ankub1 Orthologous to human ANKUB1 (ankyrin repeat and ubiquitin domain containing 1).

NR:

description
protein ANKUB1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989301.1 True 1468 mRNA 0.57 4 9896711 9912583

Neighbor

gene id symbol gene type direction distance location
LOC110514871 ankub1 coding downstream 2015 9833280 ~ 9894696 (-)
LOC110519733 ankub1 coding downstream 66345 9827287 ~ 9830366 (-)
LOC110518492 ankub1 coding downstream 84934 9789164 ~ 9811777 (-)
LOC110530072 ankub1 coding downstream 108009 9688982 ~ 9788702 (-)
LOC110511241 ankub1 coding downstream 200108 9648533 ~ 9696603 (-)
LOC118937721 ankub1 coding upstream 13408 9925991 ~ 9930497 (-)
LOC118966397 NA coding upstream 33769 9946352 ~ 9948738 (-)
LOC110514908 ankub1 coding upstream 36327 9948910 ~ 9977803 (-)
LOC110532571 LOC106574142 coding upstream 53156 9965739 ~ 10005720 (-)
LOC110533192 LOC106574144 coding upstream 141258 10053841 ~ 10079574 (-)
G8479 LOC106574155 non-coding downstream 172473 9701264 ~ 9724238 (-)
G8457 NA non-coding downstream 246002 9575914 ~ 9650709 (-)
G8460 NA non-coding downstream 270332 9578579 ~ 9626379 (-)
G8443 NA non-coding downstream 286876 9534591 ~ 9609835 (-)
G8547 NA non-coding upstream 69635 9982218 ~ 9982559 (-)
G8574 NA non-coding upstream 130603 10043186 ~ 10043434 (-)
G8399 NA non-coding upstream 138487 10051070 ~ 10053224 (-)
G8589 NA non-coding upstream 171202 10083785 ~ 10084455 (-)
G8601 NA non-coding upstream 224836 10137419 ~ 10137744 (-)
G8455 LOC106574127 other downstream 306125 9567941 ~ 9590586 (-)
G7965 NA other downstream 713677 9181455 ~ 9194911 (-)
G7985 NA other downstream 742764 9153270 ~ 9153947 (-)
LOC110529747 tsc22d2 other downstream 1521147 8330314 ~ 8419050 (-)
G7184 LOC100135997 other downstream 1712778 8164276 ~ 8183933 (-)
G10263 NA other upstream 1650154 11562737 ~ 11563125 (-)
G10343 NA other upstream 1732497 11645080 ~ 11645703 (-)
G10776 NA other upstream 1943127 11855710 ~ 11856390 (-)
G10792 NA other upstream 1960522 11873105 ~ 11873891 (-)
LOC118938491 NA other upstream 2274321 12186901 ~ 12205391 (-)

Expression


Co-expression Network