LOC110510920 (LOC106574155)


Basic Information

Item Value
gene id LOC110510920
gene name LOC106574155
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 9980527 ~ 9991542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021592072.2
TGAAGACAGTGGTTAGGTTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGGAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAAGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAAAAGCTTGCCGGCTTGTGTCTGAGAATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAATTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGGTATGTTCTTAAAGGGAAATTtaacaacttcatattcatctccAGCATCACCATATGTGAAAATTACACATTTCCATGctttgtagtaaaaaaaatatagaggGACGTAACTGTTTCCAATAGTGCTGAgaaattagtgctttttgaggttggtttggtttccattcaaatatttaaaaaataatcacggttttGGATTTCAATACTTTTTTTAGACATTGAATGCACTATGGATTATgtgtgttgaatgctgtaacaacacataataaaacaatgaataaaagtcccatgatggtagtgactgtccattactgttTATGACTTATCAACCATCATTTACTTTCtcatataaaatatttatttgatgactttattatttcattccaagtcatcaactcatctctatagagctgctgcttattctgtctgacaaaatcactattttagtagttcttctaaGTAAATAAGACCTACTTTTATGACCGCTGAACACCAActgtcaatcacttagatcatgtatttccaGGTAGAGGATCCTCGCAACGCAACTGCTTTTTATCTCTCTCATGCATTCTCTCGTCTCTCCGTCTCAGTCAATGAGGTTTCCGTATCTGCTCCACACAGAGTGGACAAGCAAGTGggcgtgcaatggattatggGAATTAATTGCCGTATTTTctgtgctaaactatgtagaatattggcctgttggaaactacaactccctactacattgcatagttcgtgcttgatctgatttatctctacagaaactgAGCATCGAgctcacag
>XM_036936075.1
TGGTTAGGTTCTGCCATTGGGACTGCTCTGATGTTTCCATTCTCTCCTGGTTATGACCATAGAGCCTTGTCCCAGTCTCtagacctgcctgtctgtgtgatggATGACCACCTGACCTCTGAAGCTGTCAATGAGATGGAGCAGAGCAATTCTACCAGGAGCAGAGCAACCTCAGTGATGGAAACCACAGAAGAGGGGAAGCTCAACAATGTGGAACATCTGACACTTATGGACTTCCTTCAAAACCTAACTGAGAAGCAATGGAAGGGGATTCGTGAGGGCATGTTTGACCCGCTGACAAAACAAAAGCTTGCCGGCTTGTGTCTGAGAATTGTCCAGTTTTTATCGGACAAGCTGATGCAGATCATCATCCCAGGTCTTTACGAACTACTGGGCATCCAAGATGCTGCCTCTTCTCCATTGTCACAGAGATCTCTCACAGCGTCACTCACCAGTCTGTTAGACGATAAGGTTAACACCAAGTCCCGCGTGAGATTTACTGAGGCTGGTGTACCTAAGAGGCCAGGCAGTCGAAAGTCTTACAATAGCTTTCGCATCCCGACTCCCTACCCTTCCTCCAACTGTatggagcaggaagaggaagaagaacaggAATCACAACTTAAATTCAAGGAGATTTACCTGACTAAGGGCAGTCTGGGCAGTGGAAGCTACCTGCCCAAGGGGGCCATGAGGTATGTTCTTAAAGGGAAATTtaacaacttcatattcatctccAGCATCACCATATGTGAAAATTACACATTTCCATGctttgtagtaaaaaaaatatagaggGACGTAACTGTTTCCAATAGTGCTGAgaaattagtgctttttgaggttggtttggtttccattcaaatatttaaaaaataatcacggttttGGATTTCAATACTTTTTTTAGACATTGAATGCACTATGGATTATgtgtgttgaatgctgtaacaacacataataaaacaatgaataaaagtcccatgatggtagtgactgtccattactgttTATGACTTATCAACCATCATTTACTTTCtcatataaaatatttatttgatgactttattatttcattccaagtcatcaactcatctctatagagctgctgcttattctgtctgacaaaatcactattttagtagttcttctaaGTAAATAAGACCTACTTTTATGACCGCTGAACACCAActgtcaatcacttagatcatgtatttccaGGTAGAGGATCCTCGCAACGCAACTGCTTTTTATCTCTCTCATGCATTCTCTCGTCTCTCCGTCTCAGTCAATGAGGTTTCCGTATCTGCTCCACACAGAGTGGACAAGCAAGTGggcgtgcaatggattatggGAATTAATTGCCGTATTTTctgtgctaaactatgtagaatattggcctgttggaaactacaactccctactacattgcatagttcgtgcttgatctgatttatctctacagaaactgAGCATCGAgctcacagaagaagaaaaaaattaactatatggaattcaaataattgagccGACGTCGGTCAATTAATTGTTTAAAAAccgaaaaataacaaaaatgttggTTAAATGCTCAGCTCTAGATTCTAATGACATCATCAGTGTGCAtcgtgtgattttaaccaattatgagtaggcattgcctgctaattggttgatgatgtcatagaaaacacttatcttcctctttcttttttactacaaaacatagaaatgcccatttttcacatatgctgatgttggggtggtgctggagatgatgaatatgaagttgaaacatTTAGAAATTTCCCTTTAACATTCTTCAAACTGCCTTGTATTTATGATTGTCCTTGAAGTTATTAGAAGTTACAGTATTTGAAGTTTATAGCAATTTGGATTTTTGTAGAGGATAGATATTGCCAGGATAGATAGATATCTACAGGCCAGTTTCAATACAAATGActtatacaaaatacattttattgggcTTTAGAAATTAAGCAGTTAGGCTGACATCACACTAAGGTTTTTTCTCAGAGAAACAGCAGCGTTTTCCTCATTGTTTTCAATGGTGCAGatgtatttgacacactgaatgtgCATCACAGCCTTACATATTATTTGTTTGACTTTGATGATTTCTGCGTTGTTTTTCCCAAggactctaacctctctgtctgatgTGCAGAAGAAAACGACCAACTCTGAGACGCTACAAGTCCTCTTAGGTGTCTCAGAGGACACCCTTGTCACCTGTGTGCAGGACAGCCTGCAAGGTTCTCTATCCAAACTTGCATGCATGTCCAATTCTCCATCTGGAAGTGCAGGCTCTATGATGCTAACCCCTGCTGTAATGTCAGAGTTGGCTAAAGATGTCAAGTCGGCCTTATCAGTGGTCGTTAAGAGTGCCTCCGCTAGCCAAACCTCTGTAGTGACACCGGTAAGGGGAGACTCACAGACCAAGGTGACTGAGAGCATggtgagagagctggctgctaAACTTGAAAAAGTTGACCAAGAGAGCAAAAGTCTAACAGGGCAAGTCATGACCATGATCTCTGACACAATGGTGGCTTTTGTTGACGAGAACAAACAGAATTTGCTGGAAGATCTGAAGGACAAGATCACGTTTTTGGCATCGCATGTTGGCTTCATTGACGATCTTGATGCCCTGATAAGGAAATACGAGACCAGCTACAATATTGGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCTTGTACAACACTGTTGGAGAAAAAGGATCAGGCTTctctattgagagagagacatttgtAGAGGGTGTTCTGGCTCAGCTTGGGGATATCTCCCATTCCAGGTCCTCATCACCAATAGTATGTGAGTTCCCCTGTCAAATTGAGGATAGCAGAAGTAAGGCCACAGCTTCTTTGACCAGTCTGTTAGATTGTATTAGAAAACTCTCAAGTGAGGAATTTAAGAGAAATGCCACTCAAGCAGTGAGTGAGTTCCTAGTTAAAAAGTCCACCAGTAGCTTAACTAGTGCACAGCCTGCTTATTCCAGGTCTTGTTCCATTCAAAACCAGTACACATGGTCAAAGGATATTTGTGCGGATTCTGCTGCCTTTGGCATCATTGACACATTTGTGGAAGACCTGCAGAGCTTGGCGCAACCTGcagaagtagaggagagagaacctgacGTCCAGGAAAATGCACAAAAGCTACAGAGTAGGATCTGGTCTGCTACCACTAGTTTATATAACAATATTCAGAAGACATTAAAGGACTTCATCATTCACCAGCGGAGGTCAgacatgcagagaagaatgtctaGTCATATACCCACAGAGGACTCTGAAAATCTTGGGACTAAGGAGTACCTTGGTTTGGCAAGCCAGGACTTGAGGCAAGCTAGTAAGAGTGTGCCTCACTTGCACAGTTTGAACCTTGAAGTGGCTCTACACAGGGGTGTCAGCGAGAGTTCGAAACTTCTCTGGACTGAAACAGACGAGGCTCTACTGACCAATAGTACCAAAGAGGTAATTTCAACAATCTTGACCTCATGCGAGGATCAGACATCAAATGCACCTTGCTTCTCCACAGTAGGAAAGAAAATATCTGATATGTCCCTTGAGGTCAACATGTTGgtaggtggtgttctgtctcaGCTGAAGGACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGAGCCTCCAAAAACTCTCTAGTCATGAGTTCCAAACCAAAGCtgagaaaggagtgagtgaggTCCTCTCTAGATCATTTAACATTGTGGAGGAAGGTACAACAGATAAGTACCTCCAGTCTGTATCTACATCCACCacatctactgatattatacaaaccATGGTGAAAGACCAGCAGGAGCTCACCCAGACCACCCAATCATCTGACATGGTATCTGGAACCTCCCTGCTCACCACTGGACAGGTTTCTGAGAAAAGAATCTGGTCTGTTGCTCGTAACatctactacagtctgcaaagtaAGATTACGGAGTTTCTCAGAAAAGATCTTCAAAGATCAGACACAACACTTGGTTCAATCCAAATCTTTACATATCAAAGCAGTCCTGCATCACAAAGAGCAAGTCTCGGCCATCTTGAGGTCAACCAGAGCAGTGTTACACCTGGTGGAAACGATGCCTGTGTGGACATTCCGCACAAATTACTACCTAAAACCACTGAGCTCTCAGGATCCATGCTGGAGGATATTGACACGATTCGTTGTAGGAGTGCTGACAGCCAAAATACAAGAAATACCTATTCTTCacgctcctccatctctctaacacCTACTTCAAAATTAAGGCAGTCGAAATGGCACTTTGCTTTACCCGGGACTCCCATCCCCACTGAGTTTCCTGCTCAGattgactttcccattgttagaaacacaatcattgagGACTTCTTTCACACAGAGGACTTACTTCCTGTAACCTTTGTGGACAAAGTCAGGCAAGCTGCTGGGGTGGTAGTGGACATTATGGTGGAAAGTGTTGAGAACACACAGGAAGATGGACAGGGTGCTTCACATCTTGACGACCTCCGATCTGCTGttaggaaattgagaaaaatcaTTTCCACTTGGACCATCCACATTTTCAGCCATGAATTGGTGGATAAAGTGATAGCCCTTCAGGACAGCCACAGCACTCCACAGGTCTTAACATTGGCAGCAGCCAGAAGTGCTTCAGACTCCATTCTTTCAAGGCTGAAATGGGGAAAGGAACAATGTGCCATATCCAAGGAGCTCTCCTCTCAGCTTCTCCAGATATTTGCTGAAGAGACAGTGAAGTGCTTCCTgagacagtggtcagatgagtatGAAAACATAAACTTTGATGTTTCAGTCCAGAACGATCCAAAGACTTCTACTTGCATGGTCATTCTTCAAATGATCACCAAAGCCACTGCTAAATGTTATTTTGAGTCCGCTACCAGCGTGGCCACCAGTGACATTGTAGAAGGCGTGTTTGATTTGGAAAGGGATACCATCAGCAGTACTGGAGAGCAGGTCCTCACCTTCAATACAAAGGGTTCCAAGAACGTTAGTAAGAACCTCTGTCCTCAAGAGTCTCTGgagtaccagcctcagaacatttccCCTACTGTGTACTTTACAGAGACGATGACAACATCTCATGGCTCCTTTTCTCCTGAGGGAATTTATGATATCGCATCGTCCTTCCCACTTGAAGAGAAGAGTCGCAAACCCTCCCTTTTCACCAGATTGTCTAGATCCATCACGAAAGGCTTTCTCAGCCCATTCAAATCTTCAAGGAAAACcaaattatttaaataaattCCTCATTATAACAACGAGAGCATTCATTTGTTCAGATGAGAAT
>TU10089
TTGACGATCTTGATGCCCTGATAAGGAAATACGAGACCAGCTACAATATTGGTGAATCTGGTTCCTCCTGCACGCTCACATCTAAGAGCATCCAAAAACTCTCCAGCCGGGAGTTTCAAACATCAGCAATACAAGCAGTGAGTGGAGTTCTTGACAAAAAAGTCAGTAGTTTGAGCTTTCCTAGTTCAGTCATTCAGTCTGAGTTAACAGGTGCTGTATCAGGTCAAACATTGTCTGGCATTGTAAAGACAGAGTCAATTCACCCAGTGGGCTCAGCAGCGTCAGTAGTTGTTAAGACTTTCGTGTCAGATATGAAGTCCTTGGCTGAATCTGAAGAGAGTCCCCAACAGAAGAGTGCCTGGTCTGCTGCTGTTCACATTTACCACAGCATCCAAAACAACTTGAAAGATTATTTCGGCAAGCTTCAGAGATTTGCCCTAAAgagcattgtcacatctgatgACAACATCACAAATGCTGAGTTTAAGGAGACAGTTCCACTTCCTTGCTTAGACATGAAATATAGGCCCAGTAAGAGTGAGCCTCAGTTGCCAGAGTCCACTGGTGCAGTTACTTTACAAAGAGGCCTAAGTGAGAGCTCAAAACTTCTTTGGGCAAAAACTGAGTCAGAAGAAAGCAAGCTCCTTCTGACAACTTGCACCAAAGAAGTCATCTCAGAGCTTCTGGTCT
>TU9934
GACATCTCCTTGTCAAGGTCCCCAACACCATGTGAAGACATGTTTGAACGTCTCCAAGGTTCTCCTGAGCGAACCTCTCCAGTAAGTCTAGATTGCAGCACGGCTGCCTCCAAAGGCATTGCATCTTCCCACAGTCTTTCAACAAAGCTTCTCCAACCCAAGATAATTTTCCTCATTAAATGAGATTGCATTCATTTGTTGTCATATgttgactgttttgctagcacagactgtaaTATGTTCTGCGATTCATCCAcatgcattgaggagtataccacctcagtcacaggCTACATCAATAAGTGGATCGACAACGTCGtgtccacagtgaccgtatgtacatatccccgacagaagccatggattacaggcaacatccacaccgcgctaaaggctagagctgcttctttcaaggagcgggacactaatccagacacttatatgaaatcctgctatgccctcagactaaccatcaaacaggcaaagtggttggttaggtcagggtgtgactagggtgggcaatctaggtgatctatttctttgtttggactggtatggttcccaatcagaggcagc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021592072.2 False 1496 mRNA 0.42 4 9980527 9982610
XM_036936075.1 False 6071 mRNA 0.43 6 9980536 9987695
TU10089 False 690 TUCP 0.46 1 9983775 9984464
TU9934 True 576 TUCP 0.53 2 9985382 9991542

Neighbor

gene id symbol gene type direction distance location
LOC118937321 LOC106574127 coding upstream 16204 9956678 ~ 9964323 (+)
LOC118966382 LOC106574155 coding upstream 35445 9937165 ~ 9945082 (+)
LOC118937370 LOC106574127 coding upstream 55770 9917155 ~ 9924757 (+)
LOC118937372 LOC106574127 coding upstream 72642 9900861 ~ 9925501 (+)
LOC110510777 LOC106574127 coding upstream 90716 9878726 ~ 9889811 (+)
LOC110533060 gnb4 coding downstream 25006 10012701 ~ 10048677 (+)
ftsj3 ftsj3 coding downstream 99605 10087300 ~ 10096757 (+)
asb3 LOC106574148 coding downstream 109248 10096943 ~ 10101637 (+)
lim2.2 LOC106574149 coding downstream 116474 10104169 ~ 10107888 (+)
gipc3 LOC106574151 coding downstream 152535 10140230 ~ 10162948 (+)
G8238 NA non-coding upstream 33267 9927839 ~ 9947260 (+)
G8200 NA non-coding upstream 46972 9772064 ~ 9933555 (+)
G8263 NA non-coding downstream 20315 10008010 ~ 10008505 (+)
G8264 NA non-coding downstream 21325 10009020 ~ 10009350 (+)
G8265 NA non-coding downstream 23321 10011016 ~ 10011230 (+)
G8266 NA non-coding downstream 24155 10011850 ~ 10012067 (+)
G8253 NA non-coding downstream 63346 10051041 ~ 10053076 (+)
LOC118966784 LOC106574127 other upstream 520574 9450932 ~ 9460358 (+)
LOC110505168 LOC106574179 other upstream 1724649 8255142 ~ 8271732 (+)
LOC110501328 LOC106574178 other upstream 1750292 8229189 ~ 8231566 (+)
G6807 NA other upstream 1943373 8036617 ~ 8037154 (+)
G6518 NA other upstream 2094620 7885391 ~ 7885907 (+)
LOC110523899 LOC106574090 other downstream 1488969 11433102 ~ 11514427 (+)
LOC110538561 LOC106574035 other downstream 3250918 13238613 ~ 13295452 (+)
G12410 NA other downstream 3641168 13617059 ~ 13666871 (+)
LOC110486057 NA other downstream 4204761 14192456 ~ 14214939 (+)
G8231 NA non-coding upstream 52329 9892417 ~ 9931446 (+)
G8225 NA non-coding upstream 68382 9859404 ~ 9915393 (+)

Expression


Co-expression Network